Oncorhynchus tshawytscha (Chinook salmon): 112216172
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Entry
112216172 CDS
T05605
Name
(RefSeq) protein bicaudal D homolog 2 isoform X1
KO
K18739
protein bicaudal D
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112216172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112216172
04131 Membrane trafficking [BR:
otw04131
]
112216172
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
112216172
Membrane trafficking [BR:
otw04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112216172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BicD
COG6_N
DUF4600
Motif
Other DBs
NCBI-GeneID:
112216172
NCBI-ProteinID:
XP_024231733
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All DBs
Position
LG16:complement(67933388..67969414)
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AA seq
902 aa
AA seq
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MLEEAGQAGTEVERDEMEMGGNDLRAEVVRLNLELREANEEKLQAARYGLVVLEESAELK
KKHTQLEEEYETLKQEQQQLKEALSDSVNHHKRATADGETREECLLQETASKEAAMATSM
AELQVELRQARITLGNAHAEIDRLAGLSSQLKKECECWEAEKGHMRNEMKEYKVRELQQL
QDNSELEEENTCLQKQVSVLKENQVEFEAVKLELTHKEEQDEVLRAQLEEAARLREIAEH
QLDEALEALKEEREQKNSLRRELSALALNPFDSVGNLELHLEQLDDSGDSGGGQRSSEDQ
EHDQDSGYNNGPGSGCAPTNPNLKANGHVQRFSTPRNSDVFLRPAPGLVSDLLSELHLSD
SQKLKQQLMQAERDKTGLANTVQDLQRQLELSQQAFSEQEDKVGSLTQQLEAVQLQKHIL
PQGKAAGDRGDSSSRTLENGADDYDYELDVKSTEVLEARMKAAGEELLKLREELSQAGKR
YSALEQRCRQEKERWRGEAHELAEKIRQCIKSSRQDQERISELEKEIGATRKVATDSEGH
LSVAQEELLAFSEELANLYHHICVCNNLTPKRVTLDYYRDGARGQSGGSGGRSNHLHPHH
GRNKRRSNELFAKAVHGGDGDSRPGTPQDSRDNSPSTRCSSPAPVCPGSPTLDFRDPSNV
RNLVAVIRCQIKHLQVAVDLCRHRGTLPYSGGISCGGELESEALTEEVLKLKSLLSTKRE
QIATLRTVLKANKQTAELALSNLKTKYETEKSMVSETMVKLRNELKALKEDAATFSSLRV
MFASRCDQYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDLEAPMSPHGL
SNSPRRVRAKELGTKTGRSPRRNSPVRSRNSPRSSPVLTNSVSSTASHHFRALTHSLHTS
PR
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaggaggcaggccaagcagggactgaggtggagagggatgagatggagatgggg
ggcaatgacctgagggcagaggtggtgaggctgaatttggagctccgggaggccaatgag
gagaaactacaggcggcccgttatggcttagtggtgctggaggagagtgctgaactgaag
aagaaacacacccagctggaggaggagtatgagaccctcaaacaagagcaacagcaactc
aaagaggctctgtcagactctgtgaaccaccacaagcgtgcaacagcagatggggagacc
cgggaggagtgcctgctgcaggaaactgccagcaaggaggctgccatggcaaccagcatg
gctgagcttcaggtcgagttacggcaggcgcgtatcactctgggcaacgctcacgcagag
atcgaccgtctggctggcctctcatcccagctaaagaaggagtgtgaatgttgggaggcg
gagaagggccacatgaggaatgagatgaaggagtataaggtgcgggagctccagcagctc
caggacaacagtgagctggaggaggagaacacctgtctgcagaaacaggtgtctgtactc
aaggagaaccaggtggagtttgaggcggtgaagctggagctcacccataaggaggagcag
gacgaggttctcagggcccagctggaggaggcggcgcggctgagggagatcgctgagcat
caactggacgaggccctggaggccctgaaagaggagagggagcagaagaacagcctgagg
agggagctctcagccctggccctcaaccccttcgactctgtgggcaacctggagctgcac
ctggagcagctggatgacagtggcgatagtggagggggccagaggagctctgaggaccag
gagcacgaccaggacagtggttacaacaatggcccagggtctggttgtgctcctactaat
cctaacctcaaggcaaacgggcacgtccagcgcttctccacccccaggaacagtgatgtg
ttcctgaggcctgcccctggcctggtgtctgaccttctcagtgagctgcacctctcagac
agccagaagctcaaacagcagctcatgcaggctgagcgggataagactggtctggccaac
actgtccaggacctccagaggcagttggagctgtcccagcaggcctttagtgagcaggag
gacaaggtgggctccctgacccagcagctggaggccgtacagctgcagaaacacatccta
ccccaggggaaggcagcaggtgaccggggggacagcagcagcaggaccctggagaacggt
gcggatgactacgactatgagctggacgtaaagagcactgaggtgctggaggctcggatg
aaggcggccggcgaggagctgctgaagctgcgtgaggagctgtctcaggcagggaaacgt
tactcggccctggagcagcgctgccggcaggagaaggagcgatggaggggagaggcccat
gagctggctgagaagatccgccagtgcatcaagtccagccggcaggaccaggagcgcatc
agcgagctggagaaggagatcggagcgacgaggaaagtggctactgattctgagggtcat
ctcagcgtggcacaggaggagctgctggccttctctgaggagctggccaacctctaccac
cacatctgtgtgtgcaacaacctcacgcccaaacgcgtcaccctggactactaccgcgac
ggggccagggggcagtcaggggggagcggagggaggtccaaccacctgcacccccatcac
ggacgtaacaagcgacgctccaacgagttgtttgcgaaagcagtgcacggaggggatgga
gacagtaggcctggtactccccaggactcccgtgacaactccccctcgacacgctgctcc
tcccccgccccagtctgccctggctcccccacgctggacttcagggacccctccaacgta
cgtaacctggtggctgtcatccgctgccaaatcaaacacctccaggtggcggtggacctg
tgtcgccaccggggcacgctgccctattcgggagggatcagctgtggaggggagctggaa
agtgaggccctcacggaggaggtgctgaagctcaagtctctcctcagcaccaagagagaa
cagattgccactctcaggactgtcctcaaagccaacaaacagacagcagagttggctctg
agcaacctgaagaccaagtacgagacagagaagagcatggtgtctgagaccatggtgaag
ctgaggaacgagcttaaggccctgaaggaggacgctgccaccttctcctcactgagggtg
atgttcgccagccggtgtgaccagtatgtcacccagctggatgagatgcagaggcagcta
gcagcggctgaggatgagaagaagaccctgaactccctgctccgcatggccatccagcag
aagctggccctgacccagcgcctggaggacctggaggcccctatgtccccccacggcctc
agcaacagccctcgccgcgtcagggccaaggagctgggcaccaaaacgggccgaagcccc
cggcgcaacagccccgtacggagcaggaacagtccccgctccagcccagtcctcaccaac
agtgtgtccagcaccgccagccaccacttccgagcccttacccacagcctccacaccagc
cctcggtaa
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