Oncorhynchus tshawytscha (Chinook salmon): 112216173
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Entry
112216173 CDS
T05605
Symbol
apex2
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase 2
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112216173 (apex2)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
112216173 (apex2)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
112216173 (apex2)
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GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
112216173
NCBI-ProteinID:
XP_024231735
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All DBs
Position
LG16:67977806..67981614
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AA seq
594 aa
AA seq
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MKIVSWNINGIRTFKGGIKNALESLDADIVCVQETKVTRDLLDERTAIVEGYNSYFSFSR
GRSGYSGVATYCKDSATPFAAEEGLTGLLTTNHEGTIGCYGDSSEFSSEELQLLDNEGRA
VLTQHRVMCEDTPETVTVINVYCPRADPEKPERKHFKLQFYKLLQCRAEAILETGSRVII
LGDVNTSHRPIDHCDPDYIDDFEDHPGRKWLNGLLVDDSEGKEYEKNNEESENTSSKPLR
SGMFVDTFRHFHPTRSKAFTCWNTMTGARQTNYGTRIDYIFADHPLVKMGFVAADIMPEV
EGSDHCPVWGKLCCPLLSSAKLPPLCTRNLPEFAGRQQKLSRFLVKMDQQQPDRESCRDP
LPGSQETGETRENLNPLGSAGTTSTGMKRKLAVESCVPKSKKIMTLKAATPKPQGNLLAF
FKPKSIPVAPTREDPVSQCERGEERNEVTPSQPHTFKGGHSAGRDVPSIPGTPCTEYPQG
VCMRDKVHVPGSNIQDASVNSQNQEKDAALASEATVDPPCPRKGASLGGFWKTVLRGPPP
PPPCKAHGEPCVLRTVKKAGPNMGKQFFVCNRPQGHASNPEARCNYFSWVDKGK
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgtcagttggaacattaatggcataagaactttcaagggcggaattaaaaat
gcgcttgagtcgctggatgctgacatcgtatgtgtccaagagacaaaagtaacaagagac
ctgctggatgagaggactgctattgttgaaggttataactcatatttcagctttagtcgt
ggacgcagtggctactcaggagttgctacttactgcaaagacagtgccaccccatttgct
gcagaagagggcttgaccggtctgctgaccaccaaccacgagggaaccattggatgctat
ggtgactcgagtgagttctccagtgaggagctgcagctcctggacaacgagggaagggct
gttctcacacagcacagagtcatgtgtgaagacacacctgaaacagttacggttatcaat
gtatactgcccacgagctgacccagaaaagcctgaacgtaaacatttcaaactgcagttc
tacaagctgcttcaatgtcgggctgaagcaattttagaaactgggagccgtgtaatcatc
ttgggagatgtgaatacctcccaccggcccatagatcactgtgacccagattacatagat
gattttgaggatcaccccgggaggaaatggctaaacggtttactggttgatgacagtgaa
ggaaaggagtatgaaaaaaacaatgaggagtctgagaatacctcatcaaaacccctccgc
agcggcatgtttgtggacaccttccgccattttcacccaacacgctccaaggccttcacc
tgttggaacactatgactggagccaggcagaccaactatggcacacgtatcgactacatc
ttcgcagaccatcccttggttaaaatggggtttgtggcagcagacatcatgccagaggtg
gaggggtctgatcactgccctgtctgggggaaactgtgctgccccctcctgtccagcgcc
aagctgcctcccctctgtacccgcaacctaccagagttcgctggcaggcagcagaaactc
tcacgcttcctcgtcaagatggaccaacaacaacctgacagagagtcttgcagggaccca
ctaccaggatctcaggagactggggagacccgagagaacctgaatccactgggatcagca
gggaccacctctactggaatgaaacggaagttggcagtggaatcttgtgtcccaaagagc
aaaaagattatgacactgaaggctgctaccccaaagccccagggcaacctcctagcattt
ttcaagcccaaatccatacctgtggccccgaccagggaagaccctgtgagtcagtgtgag
aggggagaagagagaaatgaagtgaccccatcacaaccacataccttcaagggaggacat
tctgcaggacgagatgttccatcaattccaggcacaccgtgcacagaatatccccagggt
gtctgtatgagagacaaagtccatgtaccgggcagcaacatacaggatgccagtgtcaat
agtcaaaaccaggagaaggatgcagccctggcttctgaggctactgtagatcccccatgt
cccaggaagggggcttcactgggcgggttctggaagacggtcctgcgtgggccacctcca
ccgcccccctgtaaggctcatggggaaccatgtgtactccgcacagtcaagaaggcaggt
ccaaacatgggcaagcagttctttgtgtgtaaccgccctcagggccatgcatccaatccc
gaggctcgctgtaactacttttcttgggtggataaaggaaaatag
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