KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112216185
Entry
112216185         CDS       T05605                                 
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:otw01009]
    112216185
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112216185
Enzymes [BR:otw01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     112216185
Protein phosphatases and associated proteins [BR:otw01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     112216185
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112216185
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID JmjN zf-C5HC2 PHD
Other DBs
NCBI-GeneID: 112216185
NCBI-ProteinID: XP_042155464
LinkDB
Position
LG16:complement(68175071..68197103)
AA seq 1602 aa
MMAMEGEDFVPPPECPVFEPSWEEFQDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVE
VDSFRFTPRIQRLNELEAETRVKLNYLDRIAKFWEIQGSSLKIPNIERRILDLFSLSKVV
IEEGGFDIVSKERRWARVAQKLGYPTGRNIGSLLRSHYERIVYPFEVFHAGASLPQTKPK
LYDGEEVDREYKPHSIPLRQSVQPSKMSSYGRRANRLQPDGPEDSASHPLTTGSQHISAS
PDPTEEDIEKNPELKKLQIYGAGPKMMGLGLVPRNKSIPKKEELPQTVTVRDAVAAVQDK
EEPGEVKEGDSSTVTPTPPPPSDVTVKNKVKKEDDGGDRHDEKDQDDPNGDGPCTKMTMR
LRRNLSNPQFVDSFVCRMCGRGDEDEKLLLCDGCDDNYHTFCLLPPLTEAPKGNWRCPKC
VAEECKRPAEAFGFEQATREYTLQSFGEMADTYKADYFNMPVHMVPTELVEKEFWRLVSS
IEEDVTVEYGADIHSKEFGSGFPMNNGKKNLSQEEADYARSGWNLNVMPVLEQSVLCHIN
ADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSVAAERLEEVMKK
LTPELFESQPDLLHQLVTIMNPNILMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNF
AEAVNFCTADWLPAGRSCIEHYRRLRRYCVFSHEELTCKMAACPEKLDLNLAAATHREMF
IIVQEERKLRKGLLERGITEAEREAFELLPDDERQCDNCKTTCFLSALACSNCPERLVCL
YHTQDLCSCPTDKLYLRYRYTLDELFAMLHRLKVRAEVFDSWANRVKEALEQEEGNKIGI
TDLEVLKAEAAEKKFPDNELLQRLNTVLTDTHNCQQTSTELLNKTQTRRMTLAELKALVE
KMENLPCVMSQLEDVQAVLRTIEEFQTQSRALVSDRDWRRDSAPPEQLQALLEKGAGLPV
DAPECELLKGLQEQGRWLGEVRQTLGPEGGEMTLAVLRNLMEVGCNVPQSVSVETAMAEL
QELLTIAERWEEKAQICLEQRQKHPLSTLDAIVNEAQLIPVKLPNILSLQGCLSRAKAWV
TDLEEIQNGEHYPCLDDLEGLVAIGRDLPVRMEELRQLELQVASAHSWRDKASKTFLKKS
SQHSLLQVLCPCVEKRKERGEETDPLGDPDTNTLGLSAQDLRDPGAIVMAFKEGEHQEKE
ALLRLQKVNLSKPGVEKKAEKEIKTEREDKENGGGRWGEDPMELDTALHSENCGKENGDS
NHTTTGSSTPPQSVCVCGRAPRPPLLRCHLCKDWFHGGCVPFPSLLPSSGHPTNPLCWWD
WDSRFLCPRCQRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAITWQGRAKEALD
SPEIQGALEKLQELKQNQPHREEEEEDGKKGNCESVIVLSDSEGGEGDGVIDLTEENSPK
KTLKKEMNGGMQAGCENGVSKKVKSHHNVTGVGSLLPLVPSLKGPVIELSLTTRTQLEEL
QLEGDLLEVSLDQTSTIHRVLQAALEPHRQTLRTLILIELQEQKGAGRGGRAKDSKRKRK
SQRGVTGVEGTPRSLDASECKKTCPLNHTPPHIPIQTHPEIL
NT seq 4809 nt   +upstreamnt  +downstreamnt
atgatggcgatggagggggaagactttgtgccgcctcctgagtgcccagtgttcgagcca
tcatgggaggagtttcaggatcccctgggctatattgccaagatccgtccaattgcagag
aagtctggaatctgcaagattcgtcctcctgctgactggcagccaccctttgctgtggag
gtggatagtttccgcttcacaccccgtatacagagactcaatgagctagaggcggagacc
cgagtcaagctgaactacttggaccggattgccaagttctgggagatccagggatcctcc
ctcaagatcccaaacatcgagaggcgtatcttggaccttttcagcctgtccaaggttgtg
atagaggagggagggtttgatatagtcagtaaggagcggcgttgggctcgtgtggcccag
aagcttggttacccaactggcaggaacattggctccctcctgcgctcacactacgagagg
attgtctacccctttgaggtgtttcatgctggggccagcctgccgcagactaagccaaag
ctatatgatggggaagaggtggatagagaatacaagccccactccatccccctacgccag
tctgtccagccttccaagatgagcagctacggacgccgagccaatcgcctccagccagac
ggtccagaggattctgcctcccaccctctcactactggctctcaacacatctctgcatcg
cctgaccccacagaggaggacatagagaagaaccctgagctgaagaaactacaaatctac
ggggcagggcctaagatgatggggctaggactggttcccaggaataagagcatccccaag
aaagaagagctgcctcagactgtgactgtccgtgatgcagttgctgcggtccaggacaag
gaggaaccaggagaggtcaaagagggagactccagcacagtcacccccacgccaccgcct
ccttctgatgtcacggtcaagaataaagtgaagaaagaggatgatggtggagacagacat
gatgaaaaggaccaagacgaccctaacggtgatgggccctgcaccaagatgaccatgagg
ttgagacgtaacctcagcaacccccagtttgtggattcgtttgtgtgtcggatgtgtggc
cgtggcgacgaggatgagaagctcctgctgtgtgacggttgtgacgacaactaccacacc
ttctgtctactgccccccctcactgaagcccccaagggcaactggcgctgccccaagtgt
gtggctgaggagtgtaaaagaccagcggaggccttcggttttgagcaggctaccagagaa
tacaccctgcagagttttggggagatggcagacacatacaaagcagactacttcaatatg
cctgtccatatggttcctacagagctggtggagaaagagttctggcgcttggttagtagc
atagaggaggatgtgacagtggagtatggcgccgacatccattctaaagagtttggcagt
ggattccccatgaacaatggcaagaagaacctctcacaagaggaagcggattatgcccgc
agcggctggaacctgaatgtgatgccggtgctggagcagtcggtgctgtgccacatcaac
gccgatatctctggtatgaaggtgccctggctgtacgtgggcatggtattctcagccttc
tgctggcacatcgaagaccactggagctactccatcaactacctgcactggggtgagcct
aagacgtggtacggggttccctctgtagcagcagaacggttagaagaggtgatgaagaag
ctgaccccagagctgtttgagtcccagcctgacctcctccaccagctggttactattatg
aaccccaacatcctcatgtctcacggggtcccagttgtacgcaccaaccagtgtgctggc
gagtttgtcatcacgttccccagggcttaccacagcggcttcaatcagggatataatttt
gctgaagccgttaacttctgcactgcagactggctgcctgcagggcgctcctgtatcgag
cactaccgtcgtctgcggcggtactgtgttttctctcacgaggagctgacctgtaagatg
gccgcctgccctgagaagctggacctcaacctggccgctgccacgcacagagagatgttc
atcatcgtccaggaggaaaggaagctacgcaagggcctgctggagaggggtatcacagag
gcagagagggaggcgttcgagctgctgcctgatgacgagaggcagtgtgataattgcaag
acgacctgcttcctgtctgccctggcctgttccaactgccctgaacgcctcgtctgtctc
taccacacacaggacctctgtagctgccccacagacaagctctacctcaggtacaggtac
actctggatgagctgtttgccatgttacatcggctcaaagtgcgagccgaggtgtttgat
tcctgggccaacagagtgaaagaggctctggagcaggaagagggcaacaagataggcatc
acagacctggaggtcctgaaggcagaggcagcagagaagaagttccctgacaacgagctg
ctccagagactcaacactgtcctcactgacacacataactgtcagcagacaagcactgaa
cttctcaacaagacacagaccaggaggatgactctggcagagctgaaggctctagtggag
aagatggagaacctgccctgtgtgatgagccagctggaggacgtacaggcagtcctgcgt
acaatagaagagttccagactcagtcccgggctctagtgagcgaccgggactggcggcga
gactccgctcccccagaacaactgcaggccctgttggagaagggggctggcctgccggtc
gatgccccagagtgtgagctccttaaggggctgcaggagcagggccgctggctgggcgag
gtgcggcagaccctggggcccgagggcggtgagatgaccctggcggtcctcaggaacttg
atggaggtgggctgcaatgttccccagagcgtctcggtggaaacagccatggcagagctt
caggagctcctgactatagcagaacgatgggaggagaaggcccagatctgcctggagcaa
cggcagaagcaccctctgtccaccctggatgccatagtaaacgaggcccagctcatccca
gtcaagctgcccaacatcctgtctctccagggctgtctgagccgagccaaggcctgggtc
actgacctggaggagatccagaatggggagcactacccgtgtctggatgacctggagggc
ttggtggcgatagggagagacctccctgtcaggatggaggagctgaggcagctggagctg
caggtagccagcgcccactcctggagagacaaggcctccaagaccttcctgaagaagagc
agccagcacagcctgctacaggtgttgtgtccgtgtgtggagaaacgtaaggagagggga
gaagagacagatccattaggtgacccagataccaacactctgggcctctctgctcaggat
ctgagagaccctggtgccattgtgatggcgtttaaagagggagagcaccaggagaaagag
gctctgctgaggctccagaaggtcaacctgtctaaaccaggtgtggagaagaaggctgag
aaagagatcaagacagagcgggaggacaaggaaaatggaggtgggaggtggggggaggac
cccatggagctagacacagccctccactctgagaactgtggaaaggagaacggggacagt
aaccacacaacgacaggcagcagcactcctcctcagtcagtgtgtgtgtgtggccgggcg
ccacgcccccctctgctgcgctgccacctgtgtaaagactggttccatggtgggtgtgtc
ccgttcccctccctcctgccctcctcagggcaccccaccaaccccctctgctggtgggac
tgggactcacgcttcctgtgtccgcggtgccagcgctcgcggcgcccgcgtctggagacc
atcctggccctgctggtggcgctccagaggctgcctgtccgtctgccagagggagaggct
ctgcagtgtctcacagagagggccatcacctggcaggggcgtgccaaggaggcactggac
agcccagagatacagggggcactagagaagctgcaggagcttaaacagaaccagcctcac
agggaggaggaggaggaggacgggaagaaagggaactgtgagtcggtgatagtgctatca
gattcagagggaggagaaggagatggagtgatagacctcacagaggagaactctcccaag
aagaccctaaagaaagagatgaatggcggcatgcaggctggatgtgaaaacggcgtaagc
aaaaaagtaaagtctcaccacaatgttacaggtgtgggctctctgctgccgctggtccca
tcactaaaaggcccggtgatagagctgtccctgaccaccaggacccagctagaggagtta
cagctagagggagacctgctggaggtgtctctggaccagaccagcaccattcacagagtc
ctgcaggctgctttagagccacacagacaaacactcagaacactcatactgattgagctc
caggagcagaagggagcaggccgtggggggcgggctaaagactccaagaggaagaggaag
agccagaggggcgtcacaggggtggagggaacaccccggtcgctggacgcctcggagtgc
aagaagacctgtcccctcaaccacacaccccctcacatacccatccagacacaccccgag
atcttgtga

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