KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112216188
Entry
112216188         CDS       T05605                                 
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:otw01009]
    112216188
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112216188
Enzymes [BR:otw01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     112216188
Protein phosphatases and associated proteins [BR:otw01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     112216188
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112216188
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD-1st_NSD PHD_2
Other DBs
NCBI-GeneID: 112216188
NCBI-ProteinID: XP_024231765
LinkDB
Position
LG16:complement(68933765..68972696)
AA seq 1562 aa
MTQPRPDEFKPPPECPVFEPSWEEFADPFAFINKIRPIAEKTGICKVRPPPGWQPPFACN
VDRLHFTPRIQRLNELEAQTRVKLNFLDKIAKFWELQGCSLKIPHVERKILDLYQLNKNV
ADEGGFDIVCRDRRWTAIALKMGFAPGKAVGSHLRSHYERILYPYNLFQSGANLLAPELA
SKLMRLVSAPELDTFVQKPTLPLDTSDKEYKPHDLAERQQFVQPAESCCNSARRAKRMRA
EVDALVEQSLTHLSEELLINPTSCVKTEPGAEPCENRPNLRRRMGSFVAKPEPEKEIPIL
VKQEPIEPVSEADENKSRYKKKPSLDVPPPAVSVVDLYICLVCGSGSDEDRLLLCDGCDD
SYHTFCLIPPLNDIPKGDWRCPKCLAQECSKPQEAFGFEQAYRDYSLRAFGEMADSFKSD
YFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPIRNGRFKVSEKDE
MYLKCGWNLNNMAMMDPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLH
WGEPKTWYGAPGFAAEQLEAVMKKLAPELFQIQPDLLHQLVTIMNPNTLMSHGVPIYRTN
QCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWMALGRQCVDHYRLLHRYCVFSHDEM
ICQMASKANSLDVVLASAVQKDMKDMIREEQDLRDNVRKMGVKHCEQAEYNLLQDDERQC
AKCRTTCYLSAITCPCSPGRLVCLHHIQDLCSCPLTNYTLNYRFTLDDLYPMMNAVKLRA
EFYDEWASHVTESLEAKLDKKKSLSVFRSLINKSELKMFPDNDLLRQLRLVTQDAEKCSS
VAQQLLNGKRQTRYRCGGGKTQSQLTVEELRSFVRQLYNLPCSLPQAPKLKELLNCIEDF
QQHSEKLLADETTGTAEIQSLLDVSFDFDVELPELPLLRERLAQARWLEGVQQASTQRST
LTLETMRRLIDQGVGLTPHPSVEKAMARLQELLTVSEHWEDKTSSLLKARPPLSIETLSE
TAEKVAGIPAYLPNCLMLKDSISRAREWLQEAEALQDEDSIPLFYNLSDMVIRGQDIPVQ
LGPLKQLESLMAEVQAWKESAAKTFLMKNSHFTLLEVLCPRCEVEAGSPKRKSKKAKDIT
QHSKKKMVKLDCHSDVEKALSETKDSASALATLGEVRLQEMGALSSLRAANESKLLPTAD
CMDLKVCVCQNPPMGAMLQCELCRDAFHSVCVRASSDSRSAQAWLCPHCRRSEKPSLDKV
LPLLASLQRIQVRLPEGDALHYLVERTVSWQQRARQVSSSCGLPDLEESFATPPSTDGKP
TCLTPEWNRTTHDQMVFYTEQRCIPLQVGCRHYILHEQPGVCCAAADLSVELEELMVEGL
LLQVSLPEITQLYHVLLNGLKTHHTNERTSLQDDVPSDCDKLKQCNSQGKSFPQKDGLIK
EGVNGAEKKAKRRLEREAVEPERRDKAKKLQNKRQKINKDKNLERKAASTSSSHSDFSQS
DDSEEEMCPAEGCQQPEGDEVDWVQCDGSCNQWFHQVCVGVTAELAEKEDYVCDNCTISD
GR
NT seq 4689 nt   +upstreamnt  +downstreamnt
atgacccagcctcggccggacgagttcaagccacctccggagtgcccagtcttcgaacca
agctgggaggaatttgccgatccttttgcttttataaataagatccgtccaattgcggaa
aaaacgggaatttgtaaggtccgcccgcctccgggctggcagcccccatttgcatgtaat
gttgacagactgcacttcactcctcggatacagaggctcaatgaactggaggcacagacc
agagtcaagcttaacttcttggacaagattgcaaagttctgggagttgcaggggtgttct
ctgaagattcctcatgtggaacggaagatattggacctttatcaactcaacaagaatgtt
gcagatgagggtggatttgatattgtgtgtcgcgacagacgatggacggcgattgcactt
aagatgggctttgctccaggcaaggctgtgggctctcacctacggtcacactatgagaga
atcctctacccctacaacctcttccagagtggagctaacctcctggcaccagagcttgct
tccaagctgatgcgtttagtgtctgcccctgaacttgacacgtttgtccagaagccaacc
ctgccacttgacacaagtgacaaggagtacaaaccccatgacctggccgagaggcagcag
tttgtccagccagccgagtcctgctgcaacagcgcccgcagagcaaagcggatgagagct
gaggtggatgctcttgtcgaacagagcctcacacacttgtcagaagaactcctcataaac
ccaaccagttgtgtgaagaccgaaccaggagctgaaccctgtgagaacagaccaaatctg
aggaggaggatgggctcctttgttgccaagcccgagccagaaaaagaaattcccattcta
gtgaaacaagaacccatcgagccggtgagcgaggcagatgaaaacaagtctcgatataag
aaaaaacccagtcttgatgtcccacctcctgcagtgagtgtagtggacctgtatatttgt
ctggtgtgtggcagcgggagtgacgaggatcgtcttctgctgtgtgatggctgtgacgac
agttaccacaccttctgtctcataccccctctaaacgacatccccaaaggagactggagg
tgccccaagtgcctggctcaagagtgcagcaaacctcaggaggcatttggttttgagcag
gcatacagggactactctttgcgggcttttggtgaaatggcagactccttcaaatctgat
tacttcaacatgccagttcatatggttcccacagagttggtggaaaaagagttctggcgc
ttggtgagcaccatcgaggaggacgtcacagtggagtatggagcagatatagcctccaag
gagtttgggagcggattccccatcaggaatggaagatttaaggtttcagaaaaggatgag
atgtacctgaagtgtggctggaacctgaacaacatggcgatgatggacccgtcagtgttg
actcatgtcacagcagacatctgtgggatgactctaccttggctctatgtaggcatgtgc
ttttcctccttctgctggcacatcgaggaccactggagctactccatcaactacctgcac
tggggggagccgaagacgtggtatggagcacctggctttgctgcagaacagcttgaggct
gtgatgaagaaactggctccagagctgtttcagattcagcctgacctcctccaccagctg
gtcaccattatgaaccccaacaccctcatgtctcacggggtccctatttacagaacaaac
cagtgtgctggtgagtttgtcatcaccttccccagagcttatcacagtggtttcaaccag
ggtttcaacttcgctgaggctgtaaacttctgcactgtggactggatggcattaggccgc
cagtgcgttgaccactacagactactgcatcggtactgtgttttctcgcacgacgagatg
atctgccagatggcctccaaggccaacagtctggatgtggtcctggcgtcggctgtccag
aaagatatgaaggatatgatcagagaggagcaggacctacgagataatgtccgcaagatg
ggggtgaagcattgcgagcaggcggaatacaatctcctgcaggatgacgagcggcagtgt
gccaagtgcaggaccacatgttacctgtctgccatcacctgcccctgcagccctggccgg
ctggtctgtctccaccacatccaggacctttgctcctgccccctcaccaactacacactg
aattatagatttacactggatgatctgtaccccatgatgaacgcggtgaagctgcgagct
gagttctatgacgagtgggcctcccacgtgacagagtctctggaggctaaactggacaag
aaaaaaagcctgtcagtcttccgctccctcatcaataaatcagagttgaagatgttccct
gacaacgacctcctgcgtcagctccgtttagtcacacaggatgcagagaaatgctcctca
gttgcccagcagctactcaacggcaaaaggcagaccaggtatcgctgtggtggagggaag
acacagagccagctgactgtggaggagctgaggtcatttgtcaggcaactgtacaacctc
ccctgcagccttccccaagcccccaaattaaaggagctcttgaattgcattgaagacttc
cagcaacacagtgagaagctcctggcagatgagaccaccggcacagcagagatccagagt
cttttagatgttagctttgactttgacgtggagctgcctgaacttccattactacgggag
aggctggcacaagcccgctggctagagggggtgcagcaggccagcacccagcgctccacc
ctgaccctggagaccatgcggaggctgatagaccagggcgtgggtctgacccctcacccc
tctgtggagaaggccatggctcgcctgcaggagctgctaactgtgtctgaacactgggag
gacaagaccagcagcctcctcaaggccaggccccccctctctatagaaaccctctctgaa
acagctgagaaggtggctgggatccctgcttacctccccaattgtctgatgctgaaggac
tccatcagtagggccagagagtggcttcaggaagctgaggcacttcaggatgaagattcc
attccattgttttacaacctctctgatatggttattcgaggacaagacatcccagtccag
cttggccctctaaagcagctggagtctctgatggcagaggtgcaggcctggaaagagtct
gcagctaaaactttcctcatgaaaaactctcacttcactctgcttgaggttctgtgtcca
agatgtgaagttgaagcaggttctccgaaaaggaagtccaaaaaagctaaggacatcact
cagcacagcaagaagaagatggtgaagcttgactgtcacagtgatgtggaaaaagccctc
tcagagaccaaggactctgcttctgctctggcaactctcggggaggtgcggttacaggag
atgggggccctctcctccctccgggcagctaatgagtccaagctccttcccacggcagac
tgcatggacctgaaggtgtgtgtgtgtcagaatccccccatgggagccatgttacagtgt
gagctctgccgggacgccttccacagcgtgtgtgtgagggcttcctcagactcccgttca
gcccaggcctggctgtgcccgcactgccgacgctctgagaagccctccctggacaaggtc
ctgcccttgctggcatcgctgcagcgtatccaggtgcgtctgccagaaggcgatgcactt
cactatttggttgagagaacagtcagctggcaacagcgtgcacgacaggtctcttcctcc
tgtggattacccgacctggaggagagctttgcaactccaccatctacggatggaaagcca
acatgtttaactccagagtggaacaggacaactcatgatcagatggtcttctacaccgag
caaagatgcattcctctgcaagtaggttgtagacattacattttacatgaacaacctggc
gtgtgctgtgctgctgcagatcttagtgtggagctggaggagttgatggtggaagggctc
ctgctgcaggtgtctcttccagagatcacacagctctaccatgtgttactgaacgggctg
aaaacgcatcataccaacgaacgcacgtcactgcaagatgacgtcccctcagactgtgac
aaactcaagcagtgcaactctcagggaaaaagctttccacaaaaggatgggttgataaag
gaaggagtgaacggagcagagaagaaggctaagcgacgcctggagagggaggctgtagag
ccagagcgcagggacaaggccaagaagctccagaacaagagacagaaaattaacaaagac
aagaacctggaacgcaaggcggcgtcgacctcctcgtctcactccgacttctcccagtca
gatgactctgaagaggagatgtgtccagcagagggatgccagcaacctgaaggagatgag
gtcgactgggtccagtgtgatggcagctgtaaccagtggttccaccaggtctgtgtgggt
gtgacagctgagctggctgagaaagaagactatgtgtgtgacaactgcacaataagcgat
ggtcgctga

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