KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112216348
Entry
112216348         CDS       T05605                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1 isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112216348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112216348
   03041 Spliceosome [BR:otw03041]
    112216348
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112216348
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112216348
Spliceosome [BR:otw03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    112216348
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RBD_AKAP-17A
Other DBs
NCBI-GeneID: 112216348
NCBI-ProteinID: XP_024232041
UniProt: A0A8C8D264
LinkDB
Position
LG16:complement(74060208..74065096)
AA seq 405 aa
MSKEAPREPEQLRKLFIGGLSFETTDESLRAHFEQWGSLTDCVVMRDPANKRSRGFGFVT
YAGVNEVDAAMEARPHKVDGRLVEPKRAVSREDSSRPGAHVTVKKIFVGGIKEDTEDSHL
RDYFEQFGKIEVIDIMTDRNSGKKRGFAFVTFDDHDAVDRIVIQKYHTLNGHNCEVRKAL
SRQEMQTTGMGMRGGRGGGGGGGGGNYGRGGGYGGDADSSVSGGRGGGYGGGDGGYNNGY
GGGDGGYGGGPGGYGGGNRGYGGGQGGYGGGQGGGYGGGNGYNDYNNGNGNGGNFGGGKS
MASPQEAAPVAGNFGGGGGGGGNGGGNGYNDFGSYNNQASNYGPMKGNNFGGGSGGGGGG
SGGGGSGGGSGGGRNSGPYGGGYGGSSGGGGGGGGYGGGSGGRRF
NT seq 1218 nt   +upstreamnt  +downstreamnt
atgtcgaaggaggccccacgtgaacccgaacagctccgcaagctgttcatcggaggtctg
agcttcgaaaccacggatgagagtttgcgagcacacttcgaacaatggggatctcttaca
gattgtgtggtaatgagagatccagccaacaagcgctccagggggtttggatttgtcacc
tatgctggtgtgaatgaggttgacgctgccatggaagcacgtccccacaaggttgatggt
aggctcgtagagccgaagagggcggtgtccagagaggactccagccgaccaggtgctcat
gtcacagtgaaaaaaatatttgttgggggtatcaaggaagacacagaagactcacacctg
cgagactactttgagcaatttggcaagattgaagtaattgacattatgactgaccgcaac
agtggcaagaagaggggctttgcctttgtcacgtttgatgaccatgatgcagttgacagg
attgttattcagaagtaccacacactgaacggtcacaattgcgaagtgaggaaagccttg
tccagacaggagatgcagactacaggaatgggtatgaggggtggccgtggtggtggtggt
ggtggcggcggtggcaactatggcagaggtgggggatacggaggtgatgctgactcgtct
gtttcaggaggcagagggggtggatatggaggtggagatggtggttacaacaatggttat
gggggaggagatggtggctatggaggaggacccggtggttatggtggtggtaaccgtggc
tacggtggaggacaaggaggttatggcggaggacagggtgggggctacggtggcggaaat
ggttataacgactacaacaatggcaatggcaacggcgggaactttggcggcggtaagtcc
atggcttcaccacaagaggcagcaccagttgctggtaacttcggtggtggtggtggtggc
ggtggcaatggtggcggaaatggctacaatgactttggcagctacaacaaccaggcttcc
aactacggcccgatgaagggtaacaactttggcggcggcagcggtggtggtggtggtggc
agcggcggtggtggcagtggcgggggtagcggcggtggcaggaacagtggcccatatggt
ggtggttatggaggtagctcaggtgggggtggcggaggtggcggatatggtgggggctcc
ggtggacgacggttctaa

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