Oncorhynchus tshawytscha (Chinook salmon): 112216379
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Entry
112216379 CDS
T05605
Name
(RefSeq) la-related protein 4 isoform X1
KO
K18763
la-related protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112216379
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
112216379
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Paralog
Gene cluster
GFIT
Motif
Pfam:
La
RRM_fung
HP0268
Se_S_carrier
Motif
Other DBs
NCBI-GeneID:
112216379
NCBI-ProteinID:
XP_024232104
UniProt:
A0A8C8HSJ3
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Position
LG16:complement(77709264..77726554)
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AA seq
816 aa
AA seq
DB search
MSSDQGGEPRLLQEEADPGPKTCGEQETPLGIGGGSGGMVTSKGAGLNPNAKVWQAPADG
PDGAQWPPADITEGYSESVPSTGCKPYRVGFTTLEDSSSSAAATAEITVNGMDPPDLAFT
PAETTTGTLGETKLTEEQPLSSENLTESLKKELEFYFSRENLSKDLYLMSQMDSDQFVPI
WTIASMESIKALTTDMELILDVLRSSPMVQVDEQGEKVRPDHKRCIIILREVPETTPVEE
VEALFKSDDCPKVISVEFAHNNNWYITFQSDTDAQQAHRYLREEVKTFQGKPIMARIKAI
NTFFAKNGYRSMDSSLYTAQQSAPTQTQYNPNLYMQHVYSPQQQYPLYGIVPQTWTTSPT
PYFETPLAPFPNSGFVNGFSSPGHYKTGNNSLHITRPFNRNRNHVKPQVGRPGEVTPTSV
APVPLESLTGLRSPQPPTTNPGPGPLQTPPDPTSTFPHLSSTSSDPNDDGSMSVRGRRTT
YRGTRRRREDERITRPVPLAEVKVAPPKFDLATTSFPPLPGCVASTQGEPLLENRMSDVV
RGLNRDKTTELANKEVSAGPASTPGHEEAVSVSSLVQPTAKLAVHPQAPPAPVPAPSVPH
QEKKRDRVAEPSAPKVTPHRRAISGANPTGPPSTQPAVSGPKPQPRTVSSTPSTLASTTT
TTTTTTNAPLEPRKLSYAEVCQRAPPPGPPASASSTPAQPLREQRVNKAEEPGSSSTTST
DDHTRGDRQDKAQERDGGWECKESRPRDRDHRDRDSRDGRYYRNNGPPRQGGSGGLKFHE
QRRGPQLARRSSPKDAPDTLAKSRTSPGIAKVKLLI
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgagttcggaccagggcggagagccgcggctgctgcaggaggaggctgatccggggccg
aagacctgtggggagcaagagacaccacttgggatcgggggaggatcaggcggcatggtc
acctccaagggcgcaggtctgaaccccaatgccaaggtgtggcaggcccctgctgatggc
cccgacggagcacagtggcccccggctgacatcactgaaggttattcagagtctgtgccc
tccaccggttgtaaaccgtacagggtaggcttcaccaccctggaggacagcagctcctcc
gcagcagccacagctgagatcactgtgaacggcatggatcctccagacctggccttcacc
cctgctgagactacaactgggaccttgggggagaccaagctgacagaggaacagcccctc
tcgtcagagaacctgacagagtccctcaagaaagagctggagttctacttctctcgggag
aacctgtccaaggacctatacctgatgtcccagatggacagtgaccagtttgtccccata
tggaccattgccagcatggagagcatcaaggccctcactactgacatggagctcatcctg
gacgtgctccgatcctctccaatggttcaggtggatgagcaaggagagaaggtgcgtcct
gatcacaaacgctgcatcatcatactgagggaggttcctgagacgacacctgtagaggaa
gtggaggctctctttaaaagtgatgactgtccgaaagtcattagtgtagagtttgcgcac
aataacaactggtacatcacattccaatctgacactgatgctcaacaggcacacagatat
ctaagagaagaggtgaaaacatttcagggaaaacctatcatggcgaggataaaagccatc
aacacattctttgctaagaatggctaccgtagcatggacagcagcctgtacacagcccag
cagtctgccccgacccagacccagtacaaccctaacctgtacatgcagcacgtgtacagc
cctcagcagcagtaccctctctacggcattgtaccacagacctggacaacctctcctaca
ccctacttcgagactccgctggcaccatttcccaacagtggctttgtgaatggattcagt
tctcctggacactacaagactggcaacaactccctccacataactcgccccttcaacaga
aaccggaaccatgtgaaaccccaggtggggagaccaggtgaagtgacccctacatctgtg
gcccctgtccccctggagagcttgactggcctgaggagccctcagccccccaccaccaac
cctggccctgggcccctccagacccctccggacccgacctcaaccttcccccacctctcc
tccacctcctcggaccccaatgatgacggaagcatgtctgtacgcggaagaaggacgaca
tacagaggcacgcgaaggaggagagaggatgagcggatcacgagacccgtccctctggct
gaggtaaaggtggcgccccctaagtttgacctggctacaactagtttccctccgctgccg
ggctgtgtggccagtacccagggagagcccctactggagaacaggatgtctgacgtggtg
cgaggactgaacagggacaagacaacggaactagccaacaaggaagtgagtgccggccca
gcctcaaccccaggacatgaggaggcagtgtctgtctctagtcttgttcagcctacagcc
aaacttgctgtacaccctcaagcaccccccgcccctgtcccagcccccagcgtaccacat
caggagaagaagcgggatagagtggcagagccctcagcccccaaagtcaccccacataga
cgtgctatctctggggccaacccaaccggacccccctccacacagccagctgtgtctggc
cccaagccccaacccagaacagtgtcctctacaccgagcaccctggcctccaccaccacc
actaccactactactaccaatgcaccacttgagccccgcaagctcagctatgccgaggtg
tgccagcgagccccccctccaggccccccagcctcggcctcctccacaccagcccagccg
ctgcgtgagcagcgtgtcaacaaagcagaggagcccggatccagctccaccaccagcaca
gacgaccacaccaggggagatcggcaggacaaggcccaggagagggatgggggctgggag
tgcaaggagagccgaccacgtgaccgtgaccatcgagaccgtgactcccgggatggacgg
tactaccgcaacaatggaccccccagacaggggggctctgggggcctcaagttccatgaa
cagagacggggtccccaactggcccgacgcagctcccccaaggatgcccccgacacactg
gcaaagagcagaacatcccccggtatcgccaaagtaaaacttctgatatga
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