Oncorhynchus tshawytscha (Chinook salmon): 112216475
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Entry
112216475 CDS
T05605
Name
(RefSeq) laminin subunit alpha-1-like isoform X1
KO
K05637
laminin, alpha 1/2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112216475
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112216475
09142 Cell motility
04820 Cytoskeleton in muscle cells
112216475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
EGF_laminin
Laminin_B
Laminin_N
EGF_LMN_ATRN
Laminin_II
Laminin_I
Laminin_G_3
ARA70
Motif
Other DBs
NCBI-GeneID:
112216475
NCBI-ProteinID:
XP_042154715
LinkDB
All DBs
Position
LG16:complement(11896387..11977969)
Genome browser
AA seq
3085 aa
AA seq
DB search
MRLLCCAIVLLSASSAECQQRGLFPAIFNLASNAEITTNATCGEPEPEMYCKLVEHVPGR
RIRNSQCRTCNAQSQNPKEQHPITNAIDGTNGWWQSPSIKNGRQFHWVTLTLDLHQIFQV
AYVIIKAANSPRPGNWVLERSMDGVEFTPWQYYAISDTECLTRYNITPRLGPPTYKRDDE
VICTSYYSRLVPLEHGEIHTSLINGRPSADQLTSELLDFTSARYIRLRLQRIRTLNADLM
TLSYRDPKEVDPIVTRRYYYSIKDISVGGMCICYGHAQSCPWDPVAKKLQCVCEHNTCGE
SCNECCPGYHQEPWQPGTLSDGNTCEKCNCHDKANDCYFNQTVANLKMSMNSHGDFHGGG
VCISCTQNTAGVNCEACADGFYRPNKVSPHNENPCVECSCDMKGSLTPACIRDDNHAKPE
NGLNPGQCLCMEGFAGERCDRCAFGYRDFPLCSRCECSLEGSLNIDPCTECICKENVMGA
DCDLCKQGFFNLEGSDPEGCTECFCFGVSDVCESSPWSMSQTVHSNGWLLTSESVSVYTA
PLIDEDNNLIIPNITMSQSYRFVSTWAAPESFLGKRLTSYGGVLSYSVAYDVSVDNVDRS
LPSQFDLIIEGNGRTLRQMPPRQLLLTPLREQHVSVELLPQGFVDLHTGQRVDRDELMTA
LADVAGLRIRGHLNASAEGELRLSTVSLDMVDINSTNTVQARDVEQCECPLGYSGTSCES
CSSGFYRLGGILFGGNCLQCECNNHATECDINRVCLDCTHNTTGPHCDQCLHGYYGNPSE
GTPEDCQRCACPLTVATNNFSPTCLLEGPGQVTCDRCQQGYTGTKCERCANGYHGNPTVA
GQECVVCECNGNVDPWEPGHCDTSSGMCLKCHSHTSGDQCERCEDGYYGDAITAKNCQAC
ACHDKGSYSGVCDLLTGQCTCKPNVVGEKCDQCQVGFHGLLSGQGCRECDCIQSGSVSVA
CEEDGRCQCIPGVAGDKCDRCHHSYFNYQGSGCTQCECAHTHGNCNVTTGECICPPHTRG
EMCDLCEEGHWGHDTVTGCKSCNCSEMGSYATQCGITNGQCQCRSDFAGQNCDRCVMGYR
GYPECTVCNCNINGTREEFCDEALGVCSCEAPGNCVCKDNVVGGGCDECKKGTLGLSVSN
PAGCSPCFCFGVSSDCEELGGMVRVPITLGSDPELLRVVSQSDLQGSVVGVYYRNPDMLL
DTRDMETPSLAGPYYWRLPKHYQGNKLLSYGGKLSYVVAFYAMDGAGLANYEPQVLMRGG
HLGKQVIYIDMPAPDNGVTTRQDVPLTEHKWKYFNSVSEKAVSHSDFMAVLSHIEYITIK
ASYGTGLQQSRISNITMDTALEAEQGLEDMELASLIEICECPAGYAGLSCQECAPGYYRQ
PVTELNKRGKRPLIQPCVPCRCNNHSQACDLDTGECLGCQHNTAGEHCSVCSSGYYGDVK
GSVRDCSLCACPLKENSFSPTCALEGVVGDFRCNACKPGYEGRYCERCSVGYYGNPSGPG
GRCEACQCSTAGSLHPACDSLTGQCECKAGVRGRLCDQCEARHVLDGDQCVLCDDECTRV
LLDDLDAVECSFLSVNLTGVILSPYSTLVNLENDTQEVKTLMSSYRSPDYHLTRDEEDMT
NLTQDIDGLLQKAMGVSADGEEVARSTENSVTQGAELLEYINTIQTAIQALAEQAGRLNR
TDNVEMNEAKSRRLMKQVAAMLETIRVVDLAQANASISTELWAAEALLQRVQKHLQEPQG
VIESQTLNISSSLTQHQQQLVDAQALLNTARENNNHTHTLLGSINTNLPQYQGLRQNVGR
LNQMAETQLEETQDILADAVNLAEDMSTVTSQLEGAKEQLEQWNPMLRKHVDALVMELRK
QEALELVYKAEDHAQELSKKAQALQSSLAEVMNTTLKATSAAHANSNIRVNIQPAEEMAN
RAILTAAMALNMTAQQEVSLTDLGSEAVQCSAKILAECLALKNSTGGLLANISDVTDRMA
LLINNLHNTSRLIPESAFLLHSRPNGTSEQVLEAKEQAAMANSSLQRALEHLEELRVRLE
ESSKAVAQAKTSVSNTNQLFSDSHSTARTAESKLNEAESRTERLYDRLKPLKTLRENLSR
NLSEIREMINQARKQAASIKVSVLADKDCVRAYKPEMSSSNFNTLTMTVKTSEPDNLLFY
MGSSSSVDFMAVEMHRGKVGFLWDAGSGHAKLEYPDIQINNNKWHRINATRFGRHGTLSV
HQLESDPLPAVKTTSPRSATVLDVNKFTLIFVGGLGRQIKTSSAVKMTQFKGCMGEASLN
EKNIGLWNYAEREGQCRGCFMSPQTEETSFHFDGSGYSVVEKPLRSTSTSIVLLFKTLSP
NGLLLYLASNATRDFLSIELVEGQVHLTFELGSGPLTLSSNKAYNTGSWYKITLQRNKRK
AYISVMAADNSSDKEIIEAESPGSASDLNRSDLDPIYIGGLPMSRPIRRQVVARSYVGCI
KNMEIARSNFDLLRDSYGVKKGCVLEPIRSVSVLREGYVELPSMSLGSQGELLASFSTRN
HTGIILAGFSKAGTRKRRQARQPILAVMLVSGHLEVHVNMVEGGSVHKVVVKSRSGSFSD
GQEHSVILQRNRKTMTVLVDEDHQETVRLSSEKASLTFSSLYMGGLPPEEGVGLLRTTSS
FYGCIRNLALDAKLLDLSAAVKYHNVDMDSCLLEERPKRVFLPDDTDLEAEPTLDPSRPP
PPPPTQLSALTPGTLTCASMDNSTSLPEANQFGISRHSHKVLNINPNTVRRSFSLELSVR
TFTQSGLIYYMAHANQMDYATLQLLGGRLFFTCDKGSGPATASFPVPVNDGQWHTVKTDF
NKKSVVISVDSQASAPVLAKGNTLDVENKLYLGGLPHTYTAKKIGNVTHSLAGCIQKVIL
NSVELDTQSPVSEHSTAHCFTAAQDGTFFSGSGYAALMKEGYKVGSDVTVALEFRSTAPD
GVILGVSSAKVDAIGLELASGQAVFHVNNGAGRVSATSRLGRWLCDGRWHTLLAKKTKNA
LSLSVDGVTVLTDNPHPQSTSAETKDPIYVGGFPVGVKQNCLTSRSSFRGCMRNIRLIKG
HVIDILDFSTAFTLQGVSPHSCPAT
NT seq
9258 nt
NT seq
+upstream
nt +downstream
nt
atgaggctcttatgctgtgcaattgtgctgctatctgcatcctccgcggagtgccagcaa
agaggtctcttccccgccatcttcaacctggccagtaatgcagagatcaccaccaacgcc
acctgtggagagcctgagccagagatgtactgtaaactggtggaacacgtaccaggacga
cgcatccgcaactcccagtgtcggacctgtaatgcccagagtcaaaaccccaaagagcaa
catccaatcaccaacgccattgacggcaccaacgggtggtggcaaagccccagcattaaa
aatggcagacagttccactgggtgaccctcacactagatttacaccagattttccaggtg
gcctacgtcatcatcaaggcagccaactctcctcgtcccggtaactgggtgctggagcgt
tcaatggacggtgtggagttcacaccctggcagtactacgccatcagcgacacagaatgt
ctgacccgctacaacatcaccccccgcctcggaccccccacctacaaacgagacgacgag
gttatctgtacatcttactactcgcggctcgtacccctggagcatggagagatccacacg
tctttgatcaatgggcggcccagtgctgaccaactgacctcagagttgctggacttcacc
tcagcccgctacatccgcctgcgtctgcagagaatccgcacgctcaacgccgacctcatg
accctgagctaccgcgaccccaaggaggtggaccccatcgtcaccagacggtactactat
tcaatcaaagacatttcagtgggtgggatgtgcatctgttacggacacgcccagagctgt
ccctgggaccccgttgccaagaagttgcagtgtgtatgtgagcacaatacctgtggggag
agctgtaatgagtgttgccctggctaccaccaggaaccgtggcaaccgggaaccctctcc
gatggcaacacctgcgagaaatgtaactgccacgacaaggccaacgactgctactttaac
cagacggtggccaacctcaagatgagcatgaactcacatggtgacttccatggcgggggc
gtttgtatcagctgtacccagaacactgccggtgtcaactgtgaggcctgcgcagatggc
ttctacagacccaacaaggtgtctccgcacaatgagaacccatgtgtggagtgcagctgt
gacatgaaggggtctttgactcctgcctgtatcagagatgacaaccacgccaagcctgag
aatggtctgaacccaggccagtgtctgtgtatggagggctttgcgggcgagcgctgtgac
cgctgtgcctttggctacagggacttccccctgtgttcacgctgtgagtgcagtctggag
ggcagcctcaacatcgacccctgcacagagtgcatctgcaaggagaacgtgatgggggct
gactgtgacctgtgtaagcagggtttcttcaacctggagggcagtgacccagagggctgc
acagagtgtttctgcttcggtgtgtctgacgtgtgtgagagctcaccctggtctatgtct
cagacagtgcactccaatggatggctccttacctctgaaagcgtctctgtctacacggca
cccctcatagatgaagacaacaacctcatcatcccaaacatcaccatgagccaatcgtac
cgttttgtttctacatgggccgccccagagtccttcctggggaaaaggctgacatcgtac
ggaggggttttgagctacagcgtggcatatgatgtttcagtggacaacgtggacaggtct
ctgccgtcacagtttgatttgattattgagggtaatgggaggaccctgcgtcagatgccc
cccaggcagctcttgttgacgcccctgcgtgagcagcatgtttctgtggagctcttgcca
cagggcttcgtagacctgcacacaggtcagagggtggacagggacgagctgatgactgca
ctggccgacgtggccgggctgaggatcagaggtcacctcaatgccagtgcagagggggaa
ctcagattgagcactgtatctctggacatggtagacatcaattctactaacacagtccag
gcccgggacgtggagcagtgtgagtgtcccttgggctactctggcacatcctgtgagtcc
tgttcatctgggttctatcgcctcggggggatcctgttcggaggcaactgtctccagtgt
gagtgtaacaaccatgctacggaatgtgacatcaacagagtgtgtctggactgtactcac
aataccactgggccccactgtgaccaatgcctccacggttactatggcaacccctctgag
ggcaccccggaggactgccagagatgcgcttgcccgctgacagtggcaacgaacaatttc
agccccacctgtctcctggagggccctgggcaggtgacatgtgaccgatgtcagcagggc
tacactgggactaagtgtgaaaggtgtgctaacggttaccatggcaacccgacggtggca
ggccaggagtgcgtggtgtgtgagtgtaacggtaacgtggacccctgggagccgggccac
tgtgacaccagcagcggtatgtgtctgaagtgtcacagccacaccagcggagaccagtgt
gagaggtgtgaggacggctactacggtgacgccatcaccgccaagaactgccaggcttgt
gcttgccatgacaaagggtcgtactcgggagtgtgtgacctgctcactggacagtgtacc
tgcaaacccaacgtggtgggagagaagtgtgaccagtgtcaggtgggcttccacggtctt
ctcagcggacaggggtgcagagaatgtgactgtatccagtcaggatctgtgtccgtggcc
tgtgaggaagatgggaggtgccaatgcatcccaggggtggcgggggacaagtgtgaccgc
tgtcatcacagttactttaactaccagggcagtggctgtacacagtgtgagtgtgcccac
acccatggcaactgtaacgtgacgacaggcgagtgtatctgtcctccccacaccagagga
gagatgtgtgatctgtgtgaggaaggtcactggggtcacgacactgtgacaggctgtaag
tcatgtaactgcagtgagatgggcagctatgccacccagtgtggcatcacaaatgggcag
tgccagtgccgctctgatttcgctgggcagaactgtgaccgctgtgtcatgggctacagg
ggctacccagaatgcacggtgtgcaactgcaacatcaacggcaccagagaggagttctgt
gatgaggcactgggcgtgtgcagctgtgaggccccagggaactgtgtgtgcaaggacaat
gtggttggaggtggctgcgatgagtgtaagaagggaaccttgggcctatctgtttctaac
ccggccggctgcagcccctgcttctgtttcggggtctcctcagactgtgaggagctgggt
gggatggtccgggtgccgatcacactgggttctgacccagagctgctgcgtgtggtcagt
cagagtgacctccagggcagtgtagtgggggtctactaccggaacccagacatgctgcta
gacactagggacatggagacccccagcctggctggaccctactactggaggctgcctaaa
cactaccagggaaacaagttgttgtcgtatggagggaagctatcctacgtggtggcgttc
tatgctatggacggggccggcctggccaactacgagcctcaggtcctgatgagggggggt
catctggggaagcaggtcatctacatagacatgcctgcccctgacaacggggtaacaacc
cgtcaggacgtcccactgactgagcacaagtggaagtatttcaactctgtgtcagagaaa
gctgtgagtcactctgacttcatggcagtcctgagccacatcgagtacatcaccatcaag
gcatcgtatggtacagggctacagcagagcagaatatccaatatcactatggatacggcc
ctagaggcggagcaagggttggaggatatggagttggcgagtctgatcgagatctgtgaa
tgtccagctggctacgccggactgtcctgccaggagtgtgccccgggctactaccgccaa
ccagtgactgagctgaacaagcgggggaagagacccctgatccagccgtgtgtgccctgc
cgttgtaacaaccacagccaggcctgtgacctggacacgggagaatgtctgggctgtcaa
cacaacacagcaggggagcactgtagcgtgtgttcctcggggtactatggcgacgtgaaa
ggctccgtcagggactgctcgctgtgtgcctgccccctcaaagagaacagcttcagtcct
acctgtgctctagagggagtggtgggagacttccgctgcaacgcctgcaagcccggctat
gaggggcgctactgtgagaggtgttcagtgggttactatgggaacccgtctggtccagga
gggaggtgtgaggcgtgtcagtgtagtactgcaggttctctccatccggcgtgtgactct
ctgacgggccagtgtgaatgtaaagccggggtcaggggacgcctgtgtgaccagtgcgag
gcgagacacgtcctggatggggaccagtgtgtcttgtgtgatgatgagtgtaccagggtg
ctcctggatgacctggatgcagtagagtgttccttcctgtctgtcaacctgaccggggtc
atcctgtcaccctacagcacactggtcaacttggagaacgacacgcaagaggtcaagact
ctgatgtcttcgtataggagcccagactatcacctgaccagggatgaggaggacatgaca
aacctcacccaggacatagacggactgctacagaaggctatgggtgtgtctgctgatgga
gaggaagtggcccggtccacagagaacagcgttacccagggggccgagcttctggagtac
atcaacaccattcagactgctatacaagccctggcggagcaagctggccgtctgaacagg
acagacaacgtggagatgaacgaggctaagagcagacggctaatgaagcaggtggcggcc
atgttggaaacaatcagagtggtcgacttagcccaggccaacgccagcatctctacagaa
ctctgggctgccgaggctctcctccagagggtgcagaagcacctccaggagccccaggga
gtgatagagtcccagaccctcaacatctccagcagtctgacccaacaccaacagcagcta
gtggacgcccaggcccttctgaacactgccagggagaacaacaaccacacacacaccctg
ctgggcagcatcaacaccaatctgccacagtaccagggtctgaggcagaatgtgggccgg
ctgaaccagatggcagaaacacaactggaggagactcaggacatcctggctgatgctgtc
aatctggcagaggacatgagcaccgtcacctctcaactggagggggccaaggaacagctg
gagcagtggaaccccatgttgaggaagcatgtggatgctctggtgatggagctgaggaag
caagaggctctggagctcgtctacaaggctgaggaccacgcccaagaactgagcaagaag
gcccaggctctgcagagttctctagcggaggtgatgaataccactctgaaagccaccagt
gcagcgcatgccaactctaacatcagagttaacatccagcctgcagaggagatggctaac
cgagccatcctgactgctgctatggccctcaacatgacggcccagcaagaggtgtcactt
actgatctgggatctgaggctgtgcagtgtagtgctaagatactggctgagtgtctggcc
ctgaaaaacagcactgggggtctcctcgctaacatcagtgatgtgacagacagaatggcc
ttgttgataaataaccttcataacaccagcagactgatcccagagtcagccttcctgctc
catagccggcccaacggcaccagtgagcaggtgctggaggccaaagagcaggctgccatg
gccaactcctccctgcagagggcactggagcacctggaggagctcagggtcagactggag
gagtccagcaaggcagtggcccaggccaaaaccagcgtctccaacacaaaccagctgttc
tctgactcacactcaaccgccaggactgctgagtctaagctgaatgaggcagagagtcgt
accgagaggctgtatgaccgtcttaaacccctgaagaccctgcgggaaaacctgagcaga
aacctgtctgagatcagagagatgatcaaccaggcccgcaaacaggctgcctcgatcaag
gtgtcagtgctggcagacaaagactgtgtgagggcctacaagcctgagatgtcctccagt
aacttcaacactctaactatgaccgtcaagaccagcgagcctgacaacctgctcttctat
atgggcagcagctccagcgtggacttcatggcagtggagatgcatcgtggcaaggtgggg
ttcttgtgggacgcgggttcaggccacgccaaactggagtaccccgacatccagatcaac
aacaacaagtggcatcgcatcaacgccacacgctttgggaggcacggcacgctgtcagtc
caccagctggagtcagaccccctgcccgcggtcaagaccacctcaccacgctctgctacg
gtcctggatgtcaacaagtttaccctcatatttgttggtggcctgggacgccagatcaag
acgtcctcggcagtgaagatgacccagttcaagggctgtatgggggaggcatcgctcaac
gagaagaacatcgggctgtggaactacgccgagagggagggccagtgtcgcggctgcttc
atgagtccgcagacggaggagacgtccttccactttgatggcagtggctactcagtggta
gagaaacccctccgctccacctccacttccatcgtactgctgttcaagaccctctccccc
aacggcctgctgctctacctggcctccaatgccacgagggacttcctgtccattgagctg
gtggagggccaagtccatctaacctttgaacttggctctggtcctctgaccctctcctcc
aacaaagcctataacactggcagctggtacaagatcaccctgcagaggaacaaacgcaaa
gcttatatatctgtgatggctgcagacaactcatcagacaaagagattatagaggcagag
tctcctggctccgcctctgatctcaaccgctccgacctggacccaatctacatcggggga
ctgcccatgtctcgacctatcaggagacaagtagtagcacggtcctatgtgggctgcatc
aaaaacatggagatcgcccgctccaactttgaccttctccgagactcctatggtgtcaag
aaaggctgtgtgttagagccaatccgcagtgtgtctgtactgagagagggctatgtggag
ctgccatcaatgtctcttggctcccagggggagctgctggcctccttctccacccgcaac
cacactggcatcatcctggcaggcttcagcaaggcaggcacccgcaaacgcagacaggca
cgccagcccatcctggcggtcatgctggtgtcggggcacttggaggttcacgtcaacatg
gtggagggcgggagcgtccacaaggttgtggtcaaatcacgctctgggagcttcagtgac
ggacaggagcactctgtcatcctacagaggaacaggaagacgatgacggtactggtggat
gaggaccaccaggagacagtgcgcctgtcctcggagaaggcctctctgaccttctcctct
ctgtacatgggtggcctcccgccagaagagggcgtcggactgctacgaaccacttcctcc
ttctatggctgcatcaggaacctggccctggatgccaagttgttggacctgtcagctgca
gtgaagtaccacaatgtggacatggacagctgtctattggaggagaggcctaagagggtc
ttcctacctgatgacactgacctggaggccgagcccaccctggacccttccagaccccct
ccaccaccccccactcagctcagcgctctcacccccggcacgctcacgtgtgcatcgatg
gacaacagcacatccctcccagaggccaatcagtttggcatctccagacacagtcataag
gtcctcaacatcaaccccaacacagtgaggaggagtttctctctggagctgtctgtgcgt
acctttacccagagtggtttgatctactacatggcccacgccaaccagatggactacgcc
actctgcagctgctagggggtcgtctgttcttcacctgtgacaagggcagcggccccgcc
accgcctccttccctgtgccggtcaacgacggccagtggcacacagtgaagacagacttc
aataagaagagtgtggtaatcagtgtagacagccaggcgtcagctccagtgctggctaaa
ggcaacactctggatgtggagaacaagctgtacctgggaggactgccccatacctacact
gccaagaagataggcaacgtgacccacagcttggcgggctgcatccagaaggtgatcctg
aacagcgttgaacttgacacccagagtccagtgtctgaacactcgactgctcactgtttc
actgcagcccaggacgggaccttcttcagtgggagcggatatgctgctctgatgaaagag
gggtacaaggtgggctcagacgtgacggtggcgctggagttccgcagcacggcgcctgac
ggggtcatcctgggggtcagcagcgccaaggtggatgccatcggcctggagcttgccagc
ggacaggcggtgttccacgtgaacaatggcgccgggcgggtgtcggccacgtcgcggctg
ggccggtggctgtgtgacggtcgctggcacaccctgctggccaagaagaccaagaacgct
cttagtctgagcgtggacggggtcacggtgctcactgacaacccccacccccagtctacc
tccgctgagacgaaggacccaatctacgtgggaggcttccctgtcggagtgaaacagaac
tgcctgacttccagatcctcattccgtggttgtatgcgtaacatccgcctgatcaagggc
cacgtgatcgacatcctggacttcagtaccgcattcaccctccaaggagtgtctccacac
tcctgccctgccacataa
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integrated database retrieval system
