Oncorhynchus tshawytscha (Chinook salmon): 112216675
Help
Entry
112216675 CDS
T05605
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440
Homologous recombination
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112216675 (brca2)
03460 Fanconi anemia pathway
112216675 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112216675 (brca2)
03036 Chromosome and associated proteins [BR:
otw03036
]
112216675 (brca2)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112216675 (brca2)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112216675 (brca2)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
112216675 (brca2)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
112216675 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
112216675 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA-2_OB3
BRCA2
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
112216675
NCBI-ProteinID:
XP_024232400
LinkDB
All DBs
Position
LG17:85198..121358
Genome browser
AA seq
2840 aa
AA seq
DB search
MDIRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSRDWGDTEKDNPSTAISCGQDVSFK
TPLWKCPLDGEMFSTLKIFRQRRPQSPETLIEDAVFFPAQGTSATEKMDTSPCLFGKSID
GGTPSKSYRTRLHGDSFGLLDTPKHSTQAHSAKRISESLGAQLDPDMSWTSSLNTPVMSP
TIILTKSEEHSPMCPVRIATEEQVMFVRKLFPSAKESRSTMLSPEQNDRPLCQHNGLDSH
LPGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEICSTMTGVLDGAEDVLSIFFSNKSL
ALQRVKTNERIKRKQSGATKEHVPTSTTEHDKVSSERAGEYQHTRETSEPLESRTDMKSG
DLATSQWTPINVPNFSDYDMDSFHDEGSTFRDFTGSQQPDRGSSKHTVQVESALSRRTLP
CTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSVQEKYVTQMLPASPGTAPRG
ENQNMKQSKTIPDEAEFNNLNKTALDGKKPLVQKSANEENIVSQAPTKDPDLDMSQLCRV
FAQDFSQVIDYSQPCSKRADAIKNGFSASACLSAMRLRNRKLLNRLEWGQKPEHFNSGIS
DEMHIPGSQFSNSANTSRMKSTVCDSGFPPSTLSDVTQTESSNVHPSSEKSYGNQSSQGF
KTGNNWIISLPPEAIKKAKASFDDLIEENMTDVVTAASEVKPVLSCVTGSRLSTEVKFIS
PLNIAKRSKQTSVKLNGQVHVPTHQSINVSVSSHPGSGSKMASNKKIHFFSANLEKDEDL
FKEIEDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLLYTHQRSVNSQGPLTASQRAD
VSELCSLLEAADSQFEFTQFKPAKLNFYVPDGSPPRQSEKELDPDFLTGIDFDDSFNSDV
EKQSVKMVTPDKKTTISHCKEICQVTTTKIKSSGASSSNSREKSKEHVIHRRVLYIPSYS
SENIAEHSFGLLTKSTNKNHLLDMDTNTSGMECERKNLPKLDVGFKTAGGNAMIVSEKCL
SKARALFADFEEKNCVPKCAVKNTEQVEISPVQYRGEVDTHVDSNVTHFHGPEKKVDLKE
PHDENIDKIKVDFTHSHTHGDGGFQTARGKGVTISAKALQKTNAVFKDCDAMESSGCASE
KLSKTSVLLNKTGSNNFERNNCGFSTARGKRLDVSAKSLLTLLNDCDELENSKPGKIPSL
NAKIPSQNIQQKSDCDFKKPSIKAASISARIPFTAKTPFDSGMSHDVLGAKSKMLEPENS
QTHAKDPLKNGCGFSTASGKRVSVSEGALLKAQALLSECHVDGEELSKSKKKIRVDLHNP
TQKHSGFKTAGVKEVTVSPKAHRQAQALFNNCDFNMDSLISAETKQGNTDVKSADGLMNN
PGKSYCAFMTAGGENVHVSEKGILKAKSILNENLDNCTDSNAIEEAWFSDGRFLLLTEDG
TGVKKGARNKSNYSDLNGDEKSCDFSTAGGKTVHMSDGALQKAKSILNECDVIENPQPEN
GHNVHLEKIPTKETHEISHGSAASGKGVFISEKVLQHVKSVYVLGETGNVKYSVGSNPVG
SHFGFSTASGKGLSVSEKALQEACDDTLARDTDPHKRSEENRPLKVPSPHINVQRVPVKA
VRLEEVIQTIVGMECNSSSVECQAASSLLNFESLGFSGCSVTQRRYFAQEAMDCTKALLE
DEDLTDHCPGTPIQANPMSCKGGFEMRSGIGKRSAEDLGMTDQPPLKRKLLTKFDRTVDC
FRRSKLTPAKSSSDGIFKDRRVFKYNVALQPNVTRPYRANPRCVDTRLNKPEPQKTTSDP
TAEDRKPVSSKTAVFVPPFRKNVKLEPQGSSGLQDKTRAPGVFVSPFLKNNRLTREGSFK
PSEDNHSPFISEMPTKTTSVPLPEYNPITDTGSDNAKESIKEQDPQNIDKTDRGDDCGHC
LPVTLGGEDATAEESIAGQLAPDATGTLLDVVYECLQLARDMQDMRIRKKKRQTIRPLPG
SLYLAKTSGVARLTLREAVGGWHPVQHTHKQLYGYGVHRHVWDISSESAEAFRFVCRHYF
RREAFVEGCIQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPKLISEDWVFNHYRWVVW
KRACMERAFPEVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALRKIMERDDTAVKTLVLC
VCGVVTKGHNPTRQSWSETKTKTPPGSAAGSKAKSSPVGLIWLTDGWYAIKAQLDVPLTT
MLHRGRLAIGGKVLVHGAELVGSQDACSPLEAPDSLMLKIGANGTRAARWYTRLGFYSNP
SPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDGGFVFRTGRAEEREARRHGNAK
HRAMEILFAKIQAQFEKEEDVTKPFPPTEHHPTVCGKPRGRRRTLRGRDIETLLDGEELY
DAVENDPVYLEGRLSEQQREALNSYRRCVGERRQEALQERFRQALESTQEGEGRSCHNRD
VTPIWKLSIADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYRAYQLSTSEGKKRAGNT
SIQLTATKKTQFQNLQASAGWLSEIFQAREAVGFRVLLNRDLKPLCGEVDLVGYVISITD
RQGPSPVVYLVDGWLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPSSPTPIRS
AIPGLYAGDLVSFSTNPKEPHLQEAAAQLRTLVQGQEHFFSTAEERLSNLVQVSVQCLPP
LPWKADAKPDSRTTMTPQQSVRSVGPFTPLNSVVPPPPACFSGGDNKDPKSLKRKRGLDY
LCRIPSPPPLCPLGTMTLPSPCVNKTFNTPRRAETHRILKTPLAPAPQHVHLPLEDEWVE
DEELVMIDTQALHDGIERDT
NT seq
8523 nt
NT seq
+upstream
nt +downstream
nt
atggacataaggagaaacatgtttgatgctttcaaggatcaaatatgggaagagttggga
cctctgaacccaaactggtttgaagagctcactgctaaagcttccagtcgggattggggt
gatacagagaaagataatcccagtactgcaatatcttgtggacaagatgtcagtttcaaa
acaccattgtggaaatgtccccttgatggtgagatgttctctaccctgaagattttcagg
cagagaagaccacagtctcctgagacattgatagaagatgcagtgttttttcctgctcaa
ggaacctctgcaactgaaaaaatggacacaagcccatgcttatttggaaaatcaatagac
ggcgggacccccagtaaatcctatagaacaaggctgcatggagacagttttgggctgctt
gacacaccgaaacactctacgcaggcacactctgccaaacgtatatctgaaagtcttggt
gcacagttagaccctgacatgtcctggaccagttctctcaatacacctgtcatgtcgccc
accataattttgactaaaagtgaggagcatagtcctatgtgcccagtaagaattgctacc
gaagagcaggttatgtttgtgcgaaagcttttcccttcggccaaggagtctagaagcaca
atgctgtcaccagaacagaatgatagacctctctgtcaacacaatggactggattcccac
ttgcctggtgtgattgacatctcccctggctttcaagacacgttacctggtgacagtggc
agccattggaaacagactttaccagatgctattgaggacggagaaatctgcagcacaatg
accggtgtcctagatggagccgaggatgtcctctccatattcttcagcaacaaaagtttg
gctttacaacgggtgaagaccaacgagagaatcaaaaggaagcaaagtggcgcaactaag
gaacacgtacctacttctacaacggaacatgacaaagtatccagtgagagagcaggagaa
taccaacacaccagggaaacatctgagcctcttgagtccaggactgacatgaagtctggg
gatttggcgacttctcagtggactccaataaatgtacctaacttttcagactatgatatg
gattcatttcacgatgaggggtctacattccgtgacttcactggaagccagcagccggat
cgtggttcctctaagcacactgtccaggtggagtctgctctttccagaagaacattacca
tgcaccagccagccagagggatctcaattgacagggtctgtagtcgaaagctctctagaa
cacacctttcccaggaaaacaaggacatttgtttactgtgtccaaaatccacttctgtca
gtgcaagagaaatatgttactcagatgttacctgcatcacctggaactgctcccagaggt
gaaaatcagaacatgaaacaaagtaaaaccataccagatgaagctgagtttaataatctt
aacaaaactgcattggatgggaaaaagccgctagttcagaaaagtgcaaatgaagaaaat
attgtttcacaagcaccaaccaaagaccctgatcttgatatgtcacagctttgcagggta
tttgcgcaagattttagccaagtaattgactacagtcaaccatgcagcaaaagagcagat
gctattaaaaatggcttctctgcatcagcttgtctctcagcaatgagactaaggaacaga
aaactgttgaatagactagaatggggtcagaaacctgaacattttaactctggcatcagt
gatgaaatgcatattcctggttctcagtttagcaactctgcaaacacatctagaatgaag
agtacagtgtgtgatagcggcttccccccctccaccctttctgatgtcacacaaacagaa
tcatccaacgttcaccctagctctgaaaaaagttatggaaatcaatcatctcaagggttt
aaaacgggtaacaactggattatctctttgcctccagaagcaataaagaaagcaaaagca
tcattcgatgacttaattgaggaaaatatgactgatgttgttactgctgccagtgaagtg
aaacctgtgttgtcatgtgtgacaggaagccgactgtccacagaagtgaagttcattagt
ccactcaacattgccaaaaggtcaaagcaaaccagcgtaaaattgaatggtcaagttcat
gttccgacccatcagagcatcaatgtttcggtttcctcacaccctgggtctggttccaaa
atggcctccaataagaagatacattttttttcagcaaatctggagaaagacgaggatctg
tttaaggagattgaggatgaaatacctgcagtcaatattcctgagataagccttcctgag
gaaggtaacatgtcatgtggattggagcttgttgatggatctcatttaccacctctactc
tatacacaccagaggtctgttaatagccaaggtccattgacagcctcacagagagctgat
gtttcagaattgtgcagtctcttagaagctgcagacagccaatttgagttcacacagttt
aaaccagcaaagctgaacttctatgttccagatggtagtccccctcgtcaatctgagaaa
gaattggatcccgactttctcacaggcatagatttcgatgacagtttcaactctgatgtt
gagaagcaatctgtgaagatggtcacccctgacaaaaagacaactatttctcattgcaag
gaaatttgtcaagtaacaaccaccaaaattaaatctagtggggcatcatccagcaattca
agagagaaatccaaagaacatgttatccacagaagagtactttacattcccagttatagc
tctgaaaacatagctgagcattcctttggtttgttgacaaaatccacaaacaagaaccat
ctactcgatatggatacgaacaccagtggaatggagtgtgaacgcaaaaatctccccaag
ttggatgtgggttttaaaactgctggcggaaatgctatgatagtttcagagaagtgtctg
agcaaagcaagggccttgtttgcagattttgaggaaaaaaactgtgtacccaagtgtgca
gtaaaaaatacggaacaagttgaaatttcacctgttcaatatagaggcgaagttgacaca
catgttgattcaaatgtgacacattttcatggccctgaaaagaaagtagatctgaaggaa
ccacatgatgaaaacattgacaagattaaagtggactttacacattctcacacacatggg
gatggtggtttccagacagcccgtggtaaaggagtgaccatctcggcaaaggcccttcaa
aaaaccaatgcagtcttcaaagactgtgacgctatggaaagttcaggttgtgcatcagaa
aagctgagcaaaacaagtgttttgctcaacaagactggcagtaataattttgagagaaac
aattgtggcttcagcactgctcgagggaagagacttgatgtttctgcaaaatctctactg
actctcctgaatgactgtgatgaattggaaaattctaagccagggaaaatccccagcttg
aatgcaaagataccaagtcagaatattcagcagaaaagtgactgtgattttaagaaaccc
agtattaaagcagcctccatatcagcaaggatcccttttacagcaaaaactccatttgat
agtggcatgtcacatgatgttctaggggcaaagagcaaaatgcttgaaccagaaaattct
caaacccatgctaaagatcctttgaaaaatggatgtgggttcagcactgccagtggtaaa
agagtgtctgtgtcagaaggggcgctattgaaagcacaggctcttttgagtgaatgtcat
gtagatggagaggaactttctaaatcaaagaaaaagatcagagtagatcttcataaccca
acacagaagcacagtggatttaagactgctggtgtcaaagaagttaccgtatcacctaag
gcccataggcaagcacaggctcttttcaacaactgtgatttcaatatggacagcttaatc
agtgctgaaacaaagcaagggaatacagacgtaaagtctgctgatggtctgatgaacaat
ccagggaaaagctattgtgccttcatgacagctggtggagagaatgtgcatgtatctgaa
aaaggtattttgaaggcgaagagcattctgaatgaaaaccttgataactgcacagactca
aatgccattgaggaggcttggttttcagatggtagatttttgttactcactgaagatggt
acaggtgtcaaaaaaggagcaaggaacaaatcaaattattctgacctcaacggggatgaa
aagagctgtgatttcagcactgccggggggaagactgtgcatatgtccgatggagcactc
cagaaagcaaagtctattctgaacgaatgtgatgtaattgaaaatccacaacctgagaat
ggccacaatgtgcatctggaaaagattccaacaaaggaaacgcatgaaatctctcatggt
agtgcagccagtgggaaaggggtgtttatttcagaaaaggttcttcagcatgtgaagtct
gtgtacgttctgggtgagactggtaatgtaaaatattcagttggcagtaatccagtcgga
agccattttggttttagcacagccagtggtaaaggactgtctgtttcagagaaggcactt
caagaagcgtgtgatgatacccttgccagggatactgaccctcacaaaagatctgaagaa
aataggccactgaaggtcccttctccccatattaatgttcagcgtgtgccggtcaaagca
gttcgacttgaggaagtgatccagaccattgttggaatggaatgtaattcttcatctgta
gaatgtcaagcggcgtcttccttgttaaattttgaatcccttggattcagtggctgctct
gtgacccagaggaggtactttgcccaggaggccatggattgtaccaaggctcttttagag
gatgaagacttgaccgatcattgtcctggaacaccaatccaagctaaccccatgtcctgc
aaggggggttttgagatgagaagtggaattgggaaaaggtcggcagaggatttagggatg
acagaccagcctcctctgaaaagaaaactcttgaccaaattcgacagaactgtggattgt
tttcgacggtcaaaactcactccagctaaaagcagttcagatggtatatttaaagacagg
agagtcttcaaatataatgtggctcttcaacctaatgtcacgaggccatatcgcgctaat
ccgagatgtgtagacacaaggctgaataagcccgagccacagaagacaacgtcagatcca
actgccgaagaccgtaaaccagttagctccaagaccgctgtatttgtccccccattccgg
aagaatgtcaagcttgagccacaggggagcagtggtcttcaggacaagactagagcgcct
ggtgtgtttgtttccccgtttctaaaaaacaaccgcttaaccagggagggttcctttaag
ccttcagaagataatcattctcccttcatctctgaaatgcctaccaagaccacatctgtt
ccacttcctgagtacaaccccatcactgacactggtagtgataacgcaaaggagtccatt
aaggaacaggacccacaaaatattgacaaaacggaccgaggtgatgattgtggccattgc
cttcctgtcaccctaggaggagaggatgccactgcagaggagtctattgcaggtcagcta
gcccctgatgccaccggtacccttctagacgttgtttatgagtgcttgcagcttgcccga
gacatgcaggacatgaggatcaggaagaagaagcggcagaccattagacctctccctggc
agcctgtacctggccaagacatctggggtggccaggctgaccctcagggaggccgttgga
ggttggcaccctgtacaacacacacacaaacagctgtatggctatggagtgcaccggcat
gtttgggatatcagcagtgagagtgctgaggcgttccgctttgtttgccgacactacttc
agacgcgaggcgtttgtagaggggtgcattcagctggccgacgggggctggctcattcct
cgcaacgatggaactgcagggaaacatgagttccacagagcattgtgtgacagccctggc
gtggaccccaagctgatcagtgaggactgggtgttcaaccactaccgctgggtggtgtgg
aaacgggcctgcatggagagggcattcccagaggtgatgggcagcctctgtctcacacca
gaacaggtgctcctacaactgaaatacaggtacgacttggaggtggacaacagcaagagg
tcagctctaaggaagatcatggagagagacgacacggcagtcaagaccctggtgctttgt
gtatgtggtgttgtcaccaaaggccataacccaacaaggcagagctggagtgagaccaag
accaaaaccccaccagggagcgccgcagggtctaaagcgaagtcgtcccctgtaggcttg
atctggctgacggatggctggtacgccatcaaggcccagctggacgtcccactgaccacc
atgctccaccggggccgcctggcgattgggggaaaggtgctggtccacggggccgagttg
gtgggatctcaggatgcctgctccccactagaggctcccgactccctcatgttgaagatt
ggggccaacggcaccagagcggcgcgttggtacaccaggctagggttctacagcaaccct
agtccattcctcctccccctctcctccctctacagcaacggaggccccgtgggctgtgtg
gacattgtggtgctgaggagctaccctacccagtggatggagaagaagtcggatggaggg
tttgtgttccgcacaggccgtgcagaggagagggaggcacggcgtcatggcaacgccaaa
cacagagccatggagatactgttcgccaagatccaggcccagtttgagaaggaggaggat
gttacaaaaccttttccgcctactgaacatcacccaacagtttgcggtaaacccagaggc
cggagacggaccctgcgtggtcgagacattgagacactgctggacggggaggagctgtac
gacgcggtggagaatgacccagtttatttggagggccgtctgagtgagcagcaacgggag
gcgttgaacagctataggcgttgtgttggtgagaggaggcaagaggcactgcaggagcgg
tttcgccaggctctggaaagcacccaggagggcgagggcaggagctgtcacaaccgagac
gtgacccccatctggaagctcagcattgctgactccagggccaagccgggcagcaatgca
gtgtacctgttgaatatctggcgcccctccatggatctgcagtccttgctgaaggaaggc
tgtcgatacagggcctaccaactatctacgtcggagggcaagaaacgagccggtaatacc
tccattcagctcaccgccaccaagaaaacccagttccagaatttacaggcttctgcaggg
tggttgtctgagattttccaagcccgagaggcggtcggctttcgcgttctcctgaaccgg
gacttaaagccactctgtggagaggtggatctggtaggctacgtcatctccatcacagac
agacaaggtccctctccagtggtgtatctagtggatggctggctggactttgtcaaggtg
cgctgctgcagcagtctggtccagcagggcttggaggaggtggtcaagcctctggctctg
gtggccctcagtaaccttcagctcagagcccatccctcctcccccacccccatccgcagc
gccatccctggcttatacgctggagatctagtctcgttttccaccaaccctaaggagcca
catctacaggaggctgctgctcaactcaggacccttgtccagggccaggaacacttcttc
agcactgcagaggagaggttatctaacttagtccaggtgtctgtccagtgtcttcctccg
ctgccatggaaagcagatgccaaaccagattcaaggactactatgacaccccagcagtca
gttcgaagcgttggccccttcacccctctgaacagcgtcgtcccccctccacccgcctgc
ttctccgggggggacaacaaagaccccaagagcttgaaaagaaagaggggcctggactac
ctgtgtcgcatcccctctccccctccactctgccccttgggcaccatgacattaccctcg
ccgtgcgtcaacaagaccttcaacacccctcgcagggctgagacccaccggatcctaaag
acacctctggcccccgctccacagcatgtccacctgcccctagaggatgagtgggtggag
gatgaagagctggtcatgattgacactcaggccttacacgatggcatagagagagacacg
tga
DBGET
integrated database retrieval system
