KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112216693
Entry
112216693         CDS       T05605                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112216693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112216693
   03041 Spliceosome [BR:otw03041]
    112216693
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112216693
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112216693
Spliceosome [BR:otw03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    112216693
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_3
Other DBs
NCBI-GeneID: 112216693
NCBI-ProteinID: XP_024232455
LinkDB
Position
LG02:37288316..37295444
AA seq 370 aa
MSKESPREPEQLRKLFIGGLSFETTDESLRTHFERWGSLTDCVVMKDPVTKRSRGFGFVT
YSSVDEVDASMEARPHKVDGRQVEPKRAVSREDSSRPGAHTTVKKIFVGGIKEDTEEHHL
RDYFDQFGKIEVIDIMTDRTSGKKRGFAFVTFDDHDAVDRIVIQKYHTVNGHNCEVRKAL
SKEDMNRSGPRGGNFGRGGGYGGGFGGGRGGGGGYGDNDGYNNYGGNGGGYGGGPGGYGG
GNRGYGGGGGGGYGNQGGSYGGGGGGYDNYNNGGGGGGSYRGGNYGASSGGGSSSGSGGG
GGGDYNDFGNYNSQSSSSYGPMKGGSGYSGGSGGGRSSGPYGGGGGVGGGGGYGGGSGGG
YGGGSGGRRF
NT seq 1113 nt   +upstreamnt  +downstreamnt
atgtcgaaggagtctccccgtgagccggagcagctccgcaagctcttcattggtgggctg
agcttcgagaccaccgacgagagtttgcggacccattttgaaagatggggttccctcaca
gattgtgtggtaatgaaagatccagtcacaaagagatcgaggggctttggctttgtcact
tacagctctgtggatgaagttgatgcatcaatggaggctcgtcctcataaggttgatggc
cgccaagtggagcccaagagagcggtgtccagagaggattcttcaaggccaggtgctcac
accactgtgaagaagatctttgtgggtggcatcaaggaggacacagaggagcatcacctt
agggactactttgatcaatttggcaagatcgaagtcatcgacatcatgactgataggacc
agcgggaagaagagggggtttgcctttgttacatttgatgatcatgatgcagtcgatagg
attgtcatccagaagtatcatacagtgaatggtcacaactgtgaagtgaggaaggctttg
tcaaaggaagacatgaaccggtccgggccaagaggtggaaactttggtagaggtggcgga
tatggaggtggtttcggtggagggagaggaggaggtggaggatatggtgataacgatgga
tacaataactatggaggcaatggtggcggctatggtggaggtcccggcgggtatggtggt
ggcaaccggggctatggcggaggcggcggcggtggttatggtaaccagggtggcagctat
ggaggaggaggaggaggatacgacaactacaacaatggaggtggtggtggtggaagctac
agaggtggtaactatggagctagtagtggtggtgggagcagcagtggaagtggtggtggt
ggtggtggagactacaatgactttggcaattacaacagccagtcgtcctccagctacggc
ccaatgaaaggaggcagcggctatagtggcggcagtggagggggccggagcagcggccca
tatggtggtggtggtggtgttggtggtggtggtggttacggaggcggctccggtggtgga
tatggagggggctccggaggtcgaaggttctag

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