Oncorhynchus tshawytscha (Chinook salmon): 112216705
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Entry
112216705 CDS
T05605
Name
(RefSeq) high mobility group-T protein
KO
K10802
high mobility group protein B1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
otw04140
Autophagy - animal
otw04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112216705
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112216705
09143 Cell growth and death
04217 Necroptosis
112216705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112216705
03400 DNA repair and recombination proteins [BR:
otw03400
]
112216705
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112216705
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
112216705
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112216705
MMR (mismatch excision repair)
Other MMR factors
112216705
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
112216705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
112216705
NCBI-ProteinID:
XP_024232484
LinkDB
All DBs
Position
LG17:complement(3024774..3027543)
Genome browser
AA seq
193 aa
AA seq
DB search
MGKDPRKPRGKMSSYAYFVQTCRAEHKKKQPEASVNFAEFSKKCSERWKPMSPKEKGTFE
DMAKQDKVRYEREMKNYIPPNGQKKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGLS
IGDTAKKLGVMWNSSAAEEKKPYEKKAATLKEKYDKDIASYRTNGRVDTASSAAAEDDDD
EDDEEDDDEDDDE
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatcctaggaagccgagaggcaagatgtcctcatatgcttacttcgtgcag
acctgcagggcggagcacaagaagaaacagcccgaagccagcgtcaacttcgccgagttc
tccaagaaatgctcagagcgatggaagcccatgtctcctaaagaaaaaggaacgtttgag
gacatggcaaagcaagacaaggtccgctacgagagagaaatgaagaactacatcccaccc
aatggccagaaaaagaagaggtttaaggatcccaatgcccccaagagaccgccgtctgcg
ttcttcatcttctgtgctgacttccgggccaagataaagagcgagcacccaggcctgtcc
attggagacactgctaagaagctgggagtgatgtggaacagctctgcagctgaggagaag
aagccgtacgagaagaaggcagccacgctgaaggagaaatacgacaaggatattgcatca
taccgcaccaatggtagagtggatactgcctcatcagcagctgcggaggacgacgacgac
gaagatgatgaggaggatgacgatgaggatgatgacgagtag
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integrated database retrieval system
