Oncorhynchus tshawytscha (Chinook salmon): 112216713
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Entry
112216713 CDS
T05605
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112216713 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112216713 (pcf11)
03019 Messenger RNA biogenesis [BR:
otw03019
]
112216713 (pcf11)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112216713 (pcf11)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112216713 (pcf11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
112216713
NCBI-ProteinID:
XP_024232495
UniProt:
A0A8C8FN77
LinkDB
All DBs
Position
LG17:2010008..2042244
Genome browser
AA seq
1696 aa
AA seq
DB search
MDCLVINGYVSDKIGLVFDRSHIAKMDDAAREDACREYQSSLEDLTFNSKPHINMLTILA
EENLHFAKDIVAIIEAQITKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLVTSFICVF
EKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSHDPAWPIKALPPTVNASIHVNPKF
LKHPEEVTSPRALSPAPLVRAPAPAPQPAVVPSVSEKSITQEQVIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLSCPSFTFQAANVVLSTPAIVPKSTLPPSVIKSSIPHVSDPKPPTR
DPRLNRAGPGALQAKESTSHKKEGHGMGGPAHTPDKQLPERPGRPERTRPPKKELLEVKT
KSKSLSPMAKGVLGKSKHYEAENMKTTADATGKKDPRLRKHLHDKADPKEEVKEKKKCTD
KEKEMDEAVMKASGRGKMANGSVSKPEREKPEPLEKPENQIRGNARTNARKRSRSPSLHL
HSPKRKTERRSPKRRARSISPSPPLHKPGKGGRQSGGKHSSHHEDPQHGTTREERVTPKK
SSSEPRRTKRPAEERPVEARDTHSSPRTTSECKETKENAKRWRSGWEENKHLKLSSEEAH
GKGAGPPQRRPSYSSSKRPTTPKQHRLSVDANLQIPEVLHSASKRDLLKKASKHLENGEI
SHDDFLNVAHQIKQLFQYQEEKQRGDSWEGSSEDGHGHAHPHHLPPTRKKPLLATPTGGV
SSGADLSDAELTYYEHKSKLRRTQVMLWQQEQGGEGWDGEDSQEEVEGVLGRPGEGPGGA
KTEVNRETNALPSGMKFTRLPKDRLKEVEEEQPTPAAIIQEYSHGNEFPRLKSLPGLRFR
RIQDPRESTATDRLKAGERERNSPLSERLPNHRPPYDDREEPKSGYNAPPRRYGGGPLSE
DHAVKPPYPRYDDPRKHDRIPPKPPSGPVLQNSVSLALDGPIRKSPVPLPVPAYERERLS
PLQQMDAAEMSPVPRFESPNSEHSCDEGPLDTPPLPRPHHPGGPPRGPVLSSVRSKHVES
PGHTPPHTTDGPQRYDGGPKGGPPSPRYDGPHKGTQSGYDGPGHIGQPGRPHPGGRYEGV
QGPGRYDGPGCSSHGPSRYDGPYPQGPGRFDGPALHKGPEKFDGPGRYDGPSMPHVPMRG
DPQGIGGRFDGGPPPPQQGRLSGRYDGRFDGQGPGPMRFDGPMQSNRFDGPMNFNSSHMQ
PGPGRFEGLMRFQQGPMRFDGAPNQPGPMRFDGPGNPSTLMGQPGPMRYDPLPSLPPQGM
PPRFDCPSGQQVSPRYHTTPNLQPPQRPLGTPMYDPVNPGGPQQFQTFPVQQNVVGQQGA
NFTVSPVPVSQAGFNNSYVRPPFYTPGVPLPPAGNMQQPMNMLSNLGQPFIPPSTVPFNQ
PAPQFPPPESHFGQVDVNDLLSKLISTGIISTGGIKPAQSTDTAAAHSGTESAATQPTPP
MVEEEEEEEQEEDENVPDLTGFVIEDMKQRYDSVVTKLYTGIQCYSCGMRFTASQTDVYA
DHLDWHYRLNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSLFFEKVNEEVVQK
TQEAAKEKEFQSVKAAADVVDETCEICQEQFEMYWEEEEEEWHLRDAIRVDEKTYHPSCF
EDYNNTSSFLDVTPSPIKLMENPLGALIKRESDEVTSCCAVVKQEVESSLSETGGEAQNV
KDEVQVKMEGETSAIS
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctcgtaataaatggttatgtttctgataagattggtttagtatttgatcga
tcacacatcgcaaagatggacgacgcggcgagggaagatgcctgccgagagtatcagtcc
tccctcgaagatttgacattcaacagtaaacctcacatcaacatgctgaccattctggca
gaggagaatctgcacttcgccaaggatatcgtcgcaataattgaagcacaaatcaccaag
gctccagctgccgagaagcttccagttttgtacttagtggattccatagtgaagaatgtt
ggaggcgaataccttgcagtgtttgctaaaaacctagtcacttcatttatatgtgttttt
gaaaaggtggatgagaacactaggaaaagtctgttcaaattacgctcaacctgggatgag
atcttcccactgaagaaactctacgctctggacgtgcgagtcaactctcacgacccggcc
tggcccatcaaagcactgccccctactgtgaacgccagcattcatgtcaaccctaagttt
ttaaaacatcctgaggaggtgacctcccctagggccctgtcccctgcacccctagtccgt
gccccagcccctgctccccagcctgcagtggtccccagcgtcagtgagaagagcatcacc
caggagcaggtgataaggcagcagctgctggccaagcagaaacagctactggagctacag
cagaagaagattgagcttgagctggagcagaccaaggcacaactgtcctgcccctctttt
acatttcaggctgctaacgtggtactgtcaactccagcaatagtgccaaagtccaccctg
cctccctctgtcatcaaatccagtatcccccatgtctctgaccccaaaccccccactagg
gacccccgcctcaaccgggccggcccaggggccctccaggccaaagaatcaaccagccat
aagaaagaaggccatggtatgggaggaccagcacacacaccagacaaacaactgccagag
cgacccggcaggcctgagaggacacggccccccaagaaagaacttctagaagtgaaaacc
aagtccaagtccctctctcccatggctaaaggggtgcttgggaagagcaagcactatgag
gctgagaacatgaagacgacagcggatgccacgggcaagaaagaccccaggctgaggaaa
catctccatgacaaggccgacccgaaagaagaggtgaaagagaagaagaaatgcactgat
aaggagaaagagatggatgaggcagtgatgaaggcatcaggcagggggaagatggccaac
ggctcagtcagcaaaccggagcgtgagaaaccggagcctctagagaaaccggagaaccag
atcagagggaatgccaggaccaatgccaggaaacgctcccgttccccctcgctgcacctg
cactcacctaagagaaagactgagaggaggtcccccaagaggagagccaggagcatctcc
ccctctcctcctttacacaaacctgggaaaggagggaggcagtcaggaggcaagcactcc
tctcaccatgaggacccccagcacgggaccaccagagaggagagggtaacccccaagaag
agctcgtctgagcccagaagaaccaagaggccggctgaggagaggccagtggaggccagg
gacacgcattcctccccccgcactacctcagagtgcaaggagaccaaggagaatgccaag
cgctggaggagtggctgggaagagaacaaacatctgaagttgtcgtcagaggaggctcat
gggaagggggcaggtcctccacagagacggccgtcatactccagcagcaagagacctacc
acccccaaacagcatcgccttagtgtcgacgcaaacctgcagatcccagaggtgcttcac
tctgccagcaagagagacctgctcaaaaaggccagtaagcatctggagaatggagagatc
agccatgatgacttcctgaatgtggctcaccagatcaagcagctgttccagtaccaggaa
gagaagcagcgaggagactcctgggagggctccagtgaggatggccacggacacgcccac
ccacaccacctcccaccaaccaggaagaagcccctgctggccacacccacagggggagtg
tcctccggggcggacttgtccgacgcagagctcacctactatgaacacaagtccaagctg
aggaggacccaggtgatgctgtggcagcaggagcaaggaggggagggttgggacggagag
gacagccaggaggaggtagagggggtgctggggaggcccggggagggccctgggggtgcc
aagactgaggttaacagggagactaacgcccttccttcagggatgaagttcaccaggctt
cctaaggacaggctgaaggaggtagaggaggagcagcccaccccagcagccatcatccag
gagtacagccacgggaacgagttccccaggctcaagtctctgccagggctacgcttcagg
aggatacaagaccccagggagtccaccgccactgacagactcaaagctggtgaaagagag
cgaaactcccccctcagtgagcggctgcccaatcacagaccaccgtacgatgatagggag
gagcctaagagcggctataatgcccctcccaggcggtacggaggaggtccgctgtctgaa
gaccatgctgtcaaacctccgtacccccgttacgatgaccctcgcaaacacgaccgcatc
ccccccaaaccccccagcggcccggtgctccagaactcagtcagcctggcactggacggc
cccattaggaagtccccggttcctttaccggtaccagcatacgagcgggagcgcctgtcc
ccgttacagcagatggacgcggcagagatgagccctgtcccgcgctttgagagccccaac
agcgagcactcgtgtgacgaagggcccctggacaccccccctctacccagaccccaccac
ccaggaggacccccccgtgggcccgtgctctcctcagtacgcagcaaacatgttgagtct
ccaggacacacccctcctcacacaacagatggcccccagagatacgacggtggtcccaaa
ggaggaccaccttcgccacgctatgatggaccccacaagggaactcagtctgggtacgac
gggcctggtcacataggtcagcctggcaggcctcaccctgggggccgttacgagggcgtc
caggggcccggtaggtacgatggaccagggtgctcctcacacggcccatcaaggtatgat
gggccctaccctcagggccccggcaggttcgacggccccgctctacataaaggaccagaa
aagtttgacggaccaggaagatacgacggcccctccatgcctcacgttccaatgagaggg
gacccacaaggcattgggggaaggtttgacggcggcccgccgcctccgcagcaaggtagg
ctatcggggcgatatgacggtagatttgacggacaggggcctgggccaatgcgttttgac
ggccccatgcagtccaaccgcttcgatggtccaatgaacttcaacagctcccacatgcag
cccggccctggaaggttcgaaggactaatgaggttccagcaaggccccatgagattcgac
ggtgctcccaaccagccaggcccgatgcgtttcgatggcccagggaacccttccacccta
atgggccagcccggccccatgcgctacgaccccctgccctctctgcccccccagggcatg
cccccacgctttgactgcccctccggccagcaggtgtctcccaggtaccacaccactccc
aacctgcagcccccgcagcggccactagggacacccatgtacgacccagtcaaccccgga
ggcccccagcagttccagacgttcccagtgcaacagaacgtggtgggccaacagggggct
aacttcacggtgtctcccgtccctgtgtcccaggctgggttcaacaactcctacgtcaga
cctccgttctacacccctggtgtgcctctgccaccggcagggaacatgcagcagccgatg
aatatgctttctaaccttggccagcccttcatccctcccagcacagtgcctttcaaccag
cctgctccccagttccctcctccagagagtcactttgggcaggtagatgtaaacgacctg
ctgtccaagctcatttccaccggcatcatctctaccggaggcatcaaaccagctcagagt
acagacactgctgcagcacacagcggtacagagtcagccgccacccaaccgacccctccc
atggtagaagaggaggaagaggaagagcaggaggaggatgagaatgtcccagacctcacc
ggcttcgtcatcgaagacatgaaacagcgctatgacagcgtggtgactaagctgtacaca
gggatccagtgttactcctgcggcatgcgtttcaccgcctctcagacagacgtctacgct
gaccacctggactggcactaccggctgaaccgttccgagaaagacatcagcaagaaggtc
acccaccgccgctggtactacagcctcacggactggatagagtttgaggagatagcggac
ctggaggagcgggccaagagcctgttctttgagaaggtgaatgaggaggtagtgcagaag
acccaggaggccgccaaggagaaggagttccagagtgttaaagcagctgcagatgtggtg
gatgagacgtgtgagatctgccaggagcagtttgagatgtactgggaggaggaggaagag
gagtggcacctgagagatgccatcagagtcgacgagaagacatatcatccttcatgtttt
gaagattacaacaatacatcttcgttcctggacgtcaccccgtcccccattaagctgatg
gagaacccgctgggtgcgctcattaaacgtgagagcgatgaggtcacttcctgctgtgct
gtggtgaaacaggaagtggagtcttcgttgtctgaaacgggcggtgaggctcaaaatgtg
aaggatgaagttcaggtgaaaatggagggagaaacgagtgcaatttcctaa
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integrated database retrieval system
