Oncorhynchus tshawytscha (Chinook salmon): 112216757
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Entry
112216757 CDS
T05605
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
otw01001
]
112216757
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112216757
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112216757
Protein kinases [BR:
otw01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
112216757
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112216757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
PHD
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_5
DUF3583
Trm112p
PRANC
DUF5054
ParB
Motif
Other DBs
NCBI-GeneID:
112216757
NCBI-ProteinID:
XP_024232575
LinkDB
All DBs
Position
LG17:complement(6010020..6022243)
Genome browser
AA seq
1220 aa
AA seq
DB search
MDESPEAAVDNDDLVIIVENEAESLPAEEERAKQLGGSLGLMDTCPVCKLNFHNREPKLL
PCLHSFCNKCLPPPSRNLVNTEQRRDPQLQADSSKPREILNVIRCPVCRQECWEVEVLDN
FFVKDSVEVPSSTVEKTSQVCMSCDDNTEATGFCVECVEFLCVTCIEAHQRVKFTRDHTI
RQKEEMSPEAVGASTQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDA
YRNHRQHLENMTHQLQEKRKAIEEVSNCINNGLQQVDENRKSVTNEIKKSICNLIMEINR
KGKILVNQLETLTKDHEVGLKKQQEDVSHLTRHLDHVINFTKWATASHSGTALLYCKRLI
LCQIHYLMRANCNASIVPQSSVRFQCRSGFWASNVDLGSLAVERIPGRQPSSMQQGFPPG
HPSQPGPGPRGEGQPGAFPPGSTAHQRGSTLAQLQLQVEKLAQHPNRAGQPPPNHWSWYQ
QGLKLPGPGPGGPPPQRPHQGGSPSQGPPNMVQIQQPGRSYGPPGPQTHPNPRSPTSMLQ
NAGFPPQSLRDLIHNSSFPPKPMDVLQGTSRYSHAPPNTGPISTQASIHQRNMMEAAQLR
RSDPSGSSSLSMPNPRASYAPSLATAFPDRHAQGRQNSPMSKSSSSEANIGSASWKRTEP
HAAAPPSAKRRRRSSPGPIIVIKDEPEDDDEVSFVQSSVGASASLPDSSTGIQPKPQQLS
LPAPMLEPQLEPEPQLEPGPPLEPEAWPGPPLEPEAWPEPQLEPEPQLEPEPQLEPEPRL
EPGARLEPEARPEPQLEPEARPEPQLEPEARPEPQLEPEARPEPQLEPEAQPETQVELEA
DPQPDREKAPGVPEDDPNEDWCAVCQNGGELLCCDRCPKVFHLNCHIPSLRESPSGEWFC
SFCRDLASPEMEYNPDSQGESPAMKEEPGSERFPPVDKRKCERLLLCIYCNEFSTDFQEP
ASPLSIPEYKELIETPMDLSIVKSRLESKESPRYCSAEEFVKDVRLIFRNCAKYYQADTE
VGGAGLSLEEYFEEQLKLLYQDRSFSGGREEGMIPPVEDEMEEGMEDDGMAPNEGDMPPV
EDDLTPVEEGMPSMEKEGTEEAPVEGGMEEEGIPPLEESMEGEEASPVKGDSPPSDATEP
ADPSTRGASSPNLPSKDAPQPLSSTPDNPPCEEAPQPLSDTPDNPPDTSPADSQDTSPAA
GLAIENEGTTEEMRDEAEEE
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagcccagaagctgctgtggacaacgatgaccttgttattattgtggaaaac
gaggcagagagcttgccagctgaagaggagagggcgaaacagctagggggtagcctcggt
ctcatggacacctgccctgtctgcaagttgaatttccataacagagagccgaaacttctg
ccatgcctccactctttctgcaataagtgtcttccacctccttcaaggaacttagtcaac
actgaacaacggcgcgacccgcaacttcaagcggacagctcgaaaccacgtgagatcctc
aatgtgatccgctgcccagtgtgtcgacaagagtgctgggaggtggaggtgctcgataac
ttctttgtgaaggactctgtggaggttcccagcagcacagtggagaagaccagtcaggtg
tgtatgagttgtgatgacaacacagaggccacggggttctgtgtggagtgtgtggagttc
ctgtgtgtgacatgtattgaggcccaccagcgagtcaagttcaccagggatcataccata
cggcagaaggaagagatgtccccagaggctgttggtgcatccacacagaagccagtgttt
tgtgacatccacaagcaggagcccctcaagctgttctgtgagacctgcgaccgtctcaca
tgcagagattgtcagctgctcaagcacaaagaccacaattaccagttccttgaggatgcc
tacagaaaccacaggcaacacctggaaaacatgacacatcagctacaggagaagaggaaa
gccatagaagaagtgtccaattgcatcaacaatggactccagcaagtcgatgaaaaccgc
aaatctgtcaccaatgagataaagaaatcaatttgcaacttgatcatggagatcaacaga
aagggaaaaatcttggtcaatcaacttgagacactgactaaggaccatgaggtcggactg
aagaaacaacaagaagatgtcagccacctgaccagacatctagatcacgtcatcaacttc
accaagtgggccacagccagtcacagtggcacagctctgctgtactgcaaaagactgatt
ctttgccaaatccattacctaatgagggccaactgtaacgcatccatcgtccctcagagc
tcagtccgcttccagtgtcgctccggtttctgggcctcaaatgtcgaccttgggtctttg
gcagtagagagaatccctggtcgtcagcccagttccatgcagcagggcttccctcctggc
caccccagccagcctggccccggccctagaggagagggccaacccggggccttccctcca
ggctccaccgcccaccagcgtgggagcaccctggcccagctccagctgcaggtagagaag
cttgctcagcaccccaacagggctggacagccccctcccaatcattggtcctggtaccag
cagggtctgaagctcccggggccaggtccagggggcccacctccacagaggccccaccag
gggggttctccatcacagggtccccccaacatggtccagatccagcagccaggccggagt
tacggaccccccggcccccaaacccatcccaaccccaggagccccacctctatgctgcaa
aacgcaggcttccctcctcagtctctaagggatctcatccacaactccagcttccctccc
aaaccaatggatgtgctacagggtacctcccgctactctcatgcacctcctaacacagga
cccatcagcactcaagcctctatacaccagcgtaacatgatggaagccgcacaactgagg
aggagtgaccccagtggatcttcatcattatccatgcccaaccccagagctagttatgct
ccgagcctagccactgccttcccagacagacatgcacaaggaagacagaattcccccatg
tccaagtcttcctcctctgaagccaacatagggtctgcttcctggaagcgtacagagcct
catgctgcggctcccccctcagctaagcggaggcgaaggtcgtcccccggaccaatcatc
gtcatcaaggacgaaccagaggacgatgacgaagtcagctttgtgcagtctagtgttgga
gcctcagccagcctgccagacagtagtacaggcatccagcccaagccccagcagctgtct
ctcccagcacccatgttggagccccagctagagccagagccccagctagagccagggccc
ccgctagagccagaggcctggccagggcccccgctagagccagaggcctggccagagccc
cagctagagcctgagccccagctagagcctgagccccagctagagccagagccccggcta
gagccaggggcccggctagagccagaggcccggccagagccccagctagagccagaggcc
cggccagagccccagctagagccagaggcccggccagagccccagctagagccagaggcc
cggccagagccccagctagagccagaggcccagccagagacccaggtagagctagaggct
gacccccaaccagaccgagaaaaggccccaggtgtccctgaagacgacccgaatgaagac
tggtgcgccgtgtgtcagaatgggggagaactgctctgctgtgacagatgtcccaaagtc
ttccatctgaactgtcatataccttcacttagagagtctcccagtggtgagtggttctgt
tcgttctgtcgtgacctggccagtcctgagatggagtataacccagatagccagggagaa
tcaccagccatgaaggaagagccaggatcagagagattccctccagttgataagaggaaa
tgtgagagactgttgctctgcatctactgcaacgagttcagtacagatttccaggagcct
gcctcaccgttgtcaatcccagagtataaggagctgattgagacaccaatggacctgtct
atagtgaagagcaggctggagtctaaggagagcccacgttactgcagtgctgaggagttt
gtcaaggatgtcaggctcatattcaggaactgtgcaaagtattaccaggcagacactgag
gtgggaggtgcaggactgagcctagaggagtactttgaagagcagctcaagctcctctac
caagacaggagcttctctgggggcagagaggagggaatgataccccctgtggaggatgag
atggaagaagggatggaagatgatgggatggctcctaacgaaggggatatgcccccggtc
gaggacgatctaacacctgttgaagaagggatgccttctatggagaaagaaggaacagaa
gaggctcctgtggaaggagggatggaggaagaagggatacctccattagaagagagcatg
gaaggggaagaggcttctccagtgaaaggagactcaccaccttctgatgctacagaacca
gcagatccatcaacaaggggtgcatcatcacccaaccttcccagcaaggatgctcctcaa
cccctctcctcaaccccagacaaccctccctgcgaggaggccccccaacccctctcagat
accccagacaaccctcccgacaccagccctgctgactcccaggacaccagccctgctgca
ggcttagccatagaaaatgaggggacgactgaagaaatgcgagacgaagcagaagaggaa
tga
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integrated database retrieval system
