Oncorhynchus tshawytscha (Chinook salmon): 112216800
Help
Entry
112216800 CDS
T05605
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112216800
03015 mRNA surveillance pathway
112216800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112216800
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112216800
mRNA cycle factors
P-body specific factors
112216800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
112216800
NCBI-ProteinID:
XP_042156009
LinkDB
All DBs
Position
LG17:complement(8743719..8764424)
Genome browser
AA seq
1332 aa
AA seq
DB search
MPAEGKRSLNMDEKEVSSFSNKEKDRDADRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEEEKKQQEEQERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKCKDKEEAAAKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEGIKLGYERGQGNRARAHSWVLRANQLNREQEDEEASTGSHLKLIVDAFI
QQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPC
MSDVADDLCSILKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKLFSKTDTLHCLKMLL
SDFSHHHIEMACTLLETSGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAY
YYCNPPPMEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPESKGYLICC
MVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA
KFLGELYNYRMVESAVIFRTLFSFISFGVNPDGGPSPLDPPEHLFRIRMVCTLLDTCGQY
FDRGSSKRKLDCFLIYFQRYIWWKKSVEVWSAEHQFPIDIDYMISDTLELLRPKMRLCIS
LEDSARQVTELEREFLVKLGLAMDGQKDGRPSSAMGSEGEALDEDDDDDDEEGGADTEEQ
SGNESEMNEPEEEEGSENEEEEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHV
ACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDA
DISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQ
EQEDYQEMMASLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRKQETKQERIERHE
KRDRQERQEKHE
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaaggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagacagggatgctgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatattggtaaggctgcagaggaaaagaggagg
cggcttgaggaggacaaaagaaagaaggaagaaaaagagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaagaagcagcaggag
gagcaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaagagaaggaggagggccaccagctccaccaggaagcctgggagcgccaccag
tgccggaaggagcttcgcgtccgcaaccagaacgcccacgagggccgtcccgaggaaacc
ttctttagccgccttgactccagcttgaagaagaacacagccttcgtcaagaagctgcgc
acgctcaccgaacagcagcgcgatgccctctccaacgactttggctcactcaacctcagc
aagtacatcggcgaggcggtgggctctgtggtggaggccaagctgaagatctctgacgtg
ggctgcgccgtgcacctgtgctccctcttccaccagcgctacgccgaattcgccccactg
ctcctccaggcctggaaaaggcactttgaggcgcgcaaggaagagaaggcacccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagctcaccatcgtaggcctgttcacc
gacaaggagggcctgtcgctcatctacgagcagctgaagagcatcatcgggacggaccgc
gagacacacacgcatgtgtcagtggtcatcagcttctgtaagcactgcggggacgacatt
gcgggcctggtgcctcgcaaggtgaaggctgcacgggagaagtttggcctggccttccct
cccagtgagatcatcaacacggaaaagcagcagccctttcagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacattgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacaggcacaagcagcat
gaggagtttgccacgtcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagagcttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctacgagaacatggtggacctgaaggccttcgtccct
gccatcctgttcaaagataacgagaagtgcaaggacaaagaggaggctgctgctaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagctcgcc
aaaaaactgttggacgagcaaggtaaagatgaagggatcaagttagggtatgagagaggt
cagggaaacagagctagggcccactcatgggtgctcagggccaatcaactaaacagagaa
caagaggatgaggaggcaagcaccgggtcccacctgaagctcattgtggacgccttcatc
cagcagcttcccaactgtgtcaacagagacctcatagacaaggctgccatggatttctgc
atgaacatgaacacaaagtcaaacaggaggaagctggtccgagctctcttcaccgttccc
agacaaaggttggatctgctgcccttttactcccgtctggtggccacccttcacccctgc
atgtcagatgtggccgatgacctgtgctccatactcaaaggagacttcaggtttcacatc
cggaagaaggaccagatcaacatcgaaacaaaaaataaaactgtgaggtttatcggggag
ctggccaagttcaagttgttctcaaaaacagacactctgcattgtctgaagatgctgctg
tcagacttctcccatcaccacatagagatggcctgcaccctgctggagaccagtggacgc
ttccttttcagatcccccgactcccacctccggaccagcgtccttctggagcaaatgatg
cgtaagaagcaggcgcagcacctggatgctcgctacgtgaccatggtggagaatgcctac
tactactgcaaccccccgcccatggagaagactgtcaggaagaagaggcccccgctgcag
gagtacatccgcaaactgctctacaaggacctctccaaggtcaccacggagaaggtgttg
aggcagatgcgtaaactcccctggcaggacccagagtctaaaggctacctgatctgctgc
atggtcaacatctggaacgtcaagtacaacagcatccactgtgtggccaacctgctggcc
ggccttgtggcctaccaggaggacgtgggcatccacgtggtggacggggtcctagaggac
atccgcctgggaatggaggtgaaccagcccaagttcaaccagcgtcggatcagcagtgcc
aagtttctgggggagctctacaactaccgcatggtggagtcagcggtcatcttccgcacc
ctcttctccttcatctcgttcggggtgaacccggatggcggccccagccccctggacccc
cccgagcacctgttccgcattcgcatggtctgcaccctgctggacacctgcggacagtac
tttgaccgcggctccagcaagaggaagctggactgcttcctcatctacttccagaggtat
atctggtggaagaagagtgtggaggtgtggagtgcagagcaccagttccccatcgatatt
gactacatgatcagtgacaccctggagctgctccgaccaaagatgaggctctgcatctcc
ctggaagactccgcacgacaggtcaccgagctggagagggagttcctcgttaaactggga
ctggccatggatgggcagaaggacggccggccctccagtgccatggggagcgaaggcgag
gctctagacgaggatgacgatgatgacgacgaagagggaggggcggacacagaggaacag
tctggcaatgagagcgagatgaacgagccagaggaagaagaagggtctgagaatgaggaa
gaggagcgggaggaagaggaggaggagaacaccgactatctgaccgactccaacaaggag
aacgagacagacgaggagaacaatgaggtgaccatccgtggtggcggtctgaagcatgtg
gcatgtgctgaggatgaggacttcatccaggctctggacaagatgatgctggagaacctg
cagcagcggagcggggaggcagtgaaggtgcaccagttggacgtggccatccccctgcag
ctgaagagccagctgaagaaaggtcctggcggacccgtctgttctggagagggggacgca
gacatctcagacaccatgcagtttgtcatgctcacacgcaagggcaacaagcagcagttt
aagatcctgaacgtgcctttatcttcccacctggctgccaaccacttcaaccagcagcag
gcagagcaggaggagaggatgaggatgaagaagctcactctggacatcaacgagagacag
gagcaagaggactaccaagaaatgatggcgtctctggcccagcggcccgctcctgccaac
accaaccgggagcggcgcccacgctaccaacaccccaaaggggcacccaacgccgacctc
atcttcaagaccggaggaagaaagcaggaaacaaagcaggagagaattgaaaggcacgaa
aagcgtgacagacaagagaggcaagagaaacacgaatga
DBGET
integrated database retrieval system
