Oncorhynchus tshawytscha (Chinook salmon): 112216823
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Entry
112216823 CDS
T05605
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112216823
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112216823
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
OVT1
Motif
Other DBs
NCBI-GeneID:
112216823
NCBI-ProteinID:
XP_024232688
UniProt:
A0A8C8CDL3
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All DBs
Position
LG17:9342137..9377995
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AA seq
1781 aa
AA seq
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MLILLIASLLTLWWRSFAQLPEFGDVCTEGSCYPATGDLLIGRAHQLTASSTCGIEKPER
FCIVGHLEEEKKCFVCDSREMYDERLNHTTSHSIENLVTTFAPNRLKTWWQSENGVENVT
IQLNLEAEFHFTHLIMTFKTFRPATMVIERSMDFGKKWQVYRYYSYNCESAFPGISVGPM
VKVDGIICDSRYSDIEPSAEGEVIFRVLDPAFEIEDPYSPRIQNMLKITNLRVQFSKLHT
LGDNLLDSRDEVTEKYYYALFDMVVRGNCFCYGHASKCAPVDGIHVGTEGMVHGHCMCNH
NTEGLNCEHCKDFYNDLPWRPAEGHNTNACKMCECNHHSRSCHFDMAVYLSTGNVSGGVC
DECQHKTTGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPAGSLQGGACDGRTDVSAGLI
AGQCRCKTSVEGERCDHCRQGHYGLGQGPNGCLQCTCNPLGTLPGGSPCDMDTGNCFCKR
LVTGRNCDQCLPRHWGLSNDMDGCRPCDCDQGGAVNNDCSPISGQCQCREHMYGRRCVQL
ESGYYFIALDHYTYEAEDAKHGPGVTVVPRPYPLNRSPTWTGAGFVNVPEGAHLEFHINN
LPDSMDYDMLIRYEPQLPEQWEQVEIRVIRPYSMRVGQPVSPCENTLPGGDQQSVSLPPG
SRHVVLLRPVCLDKGRNYTLRLSLPLYSSLSDVQSPYTLIDSLVLIPRVRELELFEGSQG
EEAWDTFQRYRCLESSQSVIKSPMTDICNDYIFSVSALLHQGAMACQCDSQGSLSAVCDP
RGGQCRCRPNMAGRNCDRCAPATFQFSPSGCRPCECNPVGSVNAFCHEATGQCECVPGAS
GRQCAHCLPGYWGFPQCRPCQCNGNSDFCHPQTGECQGCRASTTGHMCERCLDGYHGDPV
LGLGGHCRPCMCPDGPGSGRQYADGCYQTANNYQLVCVCSPGYRGARCDECAPGHHGNPQ
VPSGRCLPCQCSGNIDQLDPGSCDARTGVCLKCLHHTEGYGCQRCKLGYYGLAATQSCRR
CMCYSVGTTSEACPSPGECHCDLQTGQCPCRPNVIGQNCDRCAPNTFNIGSGQGCQTCDC
DPTHSFGTLCNELSGQCSCRPGFGGRKCNECRDKFWGDPEVKCQACDCDLRGIASEQCHR
SSGQCVCVEGVSGPRCNQCARGYHGEFPACQRCHQCFGEWDSVVGELTNQAQRLKDHVTE
LQTNGVTAPYTDTVSSLEISANAISGIVENNPAIQKMEDVQQMMQQVTEMVADLNERLNV
SEDSLSRLVVNANYTEASLDTLREQAQELERTVKDIGDRIKTVKNSNIEGAMDTITDAHL
ESKRAEIRVNQTTSYPDNTLEQSATLRREAEARLSQNQAEFDLRQQKHTERLERLTMELE
TLDLSELSKQTCGAAGGEEGCAASPCGGVGCVSEDGTHRCGGDGCDGLVTQTQSTLKTAK
DFDQEILSTMQEVDKLSRMVWEVKVHADEAKLSAREVLLKSNQSRDGVEHTNKQLRSLIK
EIRDLLTNDRANVEVIEAVSNEVLALKMPTSPGQLEALTKEIRDRVGTLTSVEDILSQSA
NDIHTTERLLEQARTASQEASEVKETADLVKEALDTTKHAQNAAIDAVKQAYNNTRGTLD
LITSVESETAESELRLSNATLRLLQLERDVTLLRESSLDTSHRTQNTERLSETAKQDAER
ALQEFDSEVKGQYSVVEGLVVTKAVGVSDAKKRAELLQQEAKELLTQTSGKLQRLRELER
SYAANQRTLEAKAGQLSGLEKTARQLLDDISQKVMIYSTCS
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattgctcatcgcatcacttttgaccctctggtggcggtcctttgcgcagctg
ccggagtttggggatgtgtgcactgaggggagctgctaccccgccaccggggaccttctg
atcggccgtgcgcaccagctcacagcctcctccacctgcggcattgagaagcctgaacgc
ttttgcattgttggtcacctggaggaggagaagaagtgttttgtgtgtgactccagggag
atgtatgatgagaggctgaaccacaccaccagccacagcatcgaaaacttggtcaccacc
tttgcccccaaccgcctcaagacctggtggcagtctgagaatggcgtggagaatgtgacc
attcaactgaacctggaagctgagttccacttcacacatctcatcatgacctttaagacg
ttccgtccggctaccatggtgatcgagcgttccatggattttgggaagaagtggcaggtg
taccgttactatagctacaactgtgagtccgccttccctgggatatccgtgggacccatg
gtcaaagtggacggcatcatctgtgactcccgctactctgacatagagccatccgcagag
ggagaggtgatattcagggtgctggacccagcgtttgagattgaagacccttacagtccc
aggatacagaacatgctgaagatcactaacctgcgtgtccagtttagtaagctccacaca
ctgggtgacaacctgctggactccagagacgaggtcacagagaaatactattatgccctc
ttcgacatggtcgtccgcggcaactgcttctgctacggacatgcctccaagtgtgcccct
gtcgatgggatacatgtaggcacagagggcatggtccatggtcactgcatgtgtaaccac
aacacagagggtctgaactgtgagcactgtaaggacttctacaacgacctgccctggagg
cctgcagagggacacaacaccaatgcctgcaagatgtgcgagtgtaaccaccactccagg
tcatgtcactttgacatggctgtgtatctgtctacggggaacgtgagtggaggagtgtgt
gatgagtgtcaacacaagaccacggggcgtcagtgtgagcaatgcagacccttctactac
cagcaccccgaaagacacctgagagaccccaacatctgtgaaccgtgtagctgtgacccg
gcgggctccctgcagggtggtgcgtgtgacggccggacagacgtgtctgctggtctgata
gcaggacagtgtcgctgtaagaccagtgtggagggagagcgctgcgaccactgtagacag
ggacactacggcctgggacagggcccaaacggctgcctgcagtgtacatgtaaccctctg
ggcacgctacctggaggaagcccatgtgacatggacacaggaaactgcttctgcaaacgc
cttgtcaccggcaggaactgtgaccagtgtctgccacgtcactgggggctgagcaatgac
atggacggctgcagaccatgtgactgcgaccagggcggagccgtcaacaatgattgttct
ccgatatcaggccagtgtcagtgtcgagaacacatgtatgggaggcgttgtgtccagctg
gagtcgggatactacttcatcgccctggaccactacacctacgaggccgaggacgccaag
cacggccctggtgtgacggtggttcccaggccctatcctctgaaccgtagtcctacctgg
acaggggcagggtttgtcaacgtacctgagggagcccacctggagttccacatcaacaac
ctacctgactccatggactatgacatgctgatccgctatgaaccacaattgcctgagcag
tgggagcaggtggagatcagagtgatacgtccatactcaatgagagtggggcagccagtc
agtccttgtgaaaacacgctaccaggaggagatcagcagtcggtgtctcttcctccagga
tccagacatgtggtgctcctgaggcctgtgtgtctggacaagggacggaactacaccctg
cgtctcagtctgcctctctactcctctctcagtgacgtccaaagcccctacacactcatc
gactccttggtgttgattccgcgggtacgtgagctggagttgtttgagggttctcagggc
gaggaggcgtgggatacgttccagaggtaccgctgtctggagagcagccagagcgtcatc
aagagccccatgacggacatctgtaacgactacatcttcagtgtgtctgctctgctacac
cagggggctatggcgtgccagtgtgactcccagggctcgctcagtgcggtgtgcgacccc
agaggcgggcagtgccggtgtcgacccaacatggcgggcaggaactgtgaccgctgtgcc
cccgccaccttccagttcagcccctcaggatgccgaccctgtgagtgtaaccctgtgggc
tctgtgaacgctttctgccacgaggccacaggtcagtgtgagtgtgtgccaggggcatca
gggcgtcagtgtgcccactgcctgccaggctactggggcttccctcaatgccggccctgc
cagtgcaacggcaacagcgacttctgccaccctcagactggggagtgccagggctgccgt
gcctccaccaccgggcacatgtgtgaaaggtgtctggatggttaccatggcgaccccgtg
ttgggtttggggggtcactgccgcccctgcatgtgtccagatgggccggggagcggacgc
cagtatgcagatggctgctaccagaccgccaacaactaccagctagtctgtgtctgcagc
cctggatacagaggagccaggtgtgacgagtgtgccccaggacaccatggtaacccccag
gtgcccagcgggcgctgtctgccctgccagtgtagcggcaacattgaccagctggacccg
gggtcctgcgacgctcgcacaggcgtctgcctcaaatgcctgcaccataccgagggctat
ggctgccagcgctgcaagctgggttactacggccttgccgccacccagagttgcaggagg
tgtatgtgttattcagtgggcacgacgtcggaggcgtgtccatccccgggggagtgtcac
tgtgacctgcagactggccagtgtccctgccggcctaacgtgattggccagaactgtgac
cgctgtgcccctaatacgttcaacataggaagcggacagggctgccagacatgtgactgt
gacccaacccactcctttgggacgttgtgcaacgagctgtcggggcagtgctcatgcagg
ccaggttttgggggaagaaaatgcaacgaatgccgagataagttctggggagatcctgag
gtcaaatgtcaagcttgtgactgtgacctgcgtggcatcgccagcgagcagtgccaccgt
tcgtccggccagtgtgtgtgtgtggagggtgtttctggaccccggtgtaaccagtgtgcc
agagggtaccatggggagttccccgcctgccaacgatgccaccagtgcttcggcgagtgg
gacagcgtggtaggggaactgaccaaccaggcgcagcgtttgaaggatcatgtgacagag
ctccagaccaatggggtgacggcgccgtacacagacaccgtcagcagtctggagattagt
gctaatgctatcagtgggatagtagagaacaaccctgctatacagaagatggaagatgta
caacagatgatgcagcaggtcactgagatggtggcagacctgaacgagaggctgaacgtc
tcagaggattccctgtcccgtctcgttgtaaatgccaactacactgaggccagtctggac
acactgagagagcaggcccaagagctagagagaacagtcaaagacattggagaccgcata
aagactgtgaagaactctaacatagagggagcgatggacaccatcaccgatgcccacttg
gagtctaagagggcggagatccgtgtcaatcagaccaccagttaccccgacaacactttg
gaacagtcggctacactacggcgcgaagcggaggccagactgagccagaaccaggcggag
tttgacctgagacaacagaaacacacagagagactggagaggcttaccatggagctcgaa
actcttgacctatcagagctcagcaagcagacatgtggagcggctggtggggaggagggg
tgcgctgcgtcaccctgtggaggggtggggtgtgtgtcggaggacggcacccatcgctgt
ggtggagatgggtgtgacggtctggtcacacagacacaaagcactctgaaaacagccaag
gacttcgaccaggaaatcctgtccaccatgcaggaagtggataagctctctagaatggtg
tgggaggtgaaggtgcatgcggacgaggccaagctgagtgctcgggaggtgctgctgaag
tccaaccagagccgagatggagtggagcacaccaacaagcagctccgcagcctcatcaag
gagatacgagacctactcactaacgaccgtgccaacgtggaggttatcgaagcggtgtcg
aacgaggtgttggccctgaagatgcccacgtcgcccgggcagctggaggccctgaccaag
gagatcagagaccgggtgggaaccctcaccagcgtggaggacatcctcagtcagagtgcc
aacgacatacacactacagagaggctgctggagcaggctcgcactgccagtcaggaggcg
tctgaggtgaaggagacagctgacctggtgaaggaggctctggatacaactaagcatgct
cagaatgctgccatcgacgccgtcaagcaggcctacaacaacaccaggggtacacttgac
ctcatcacgtctgtggagtcggagactgcggagtcagagctgcgtctgagtaatgccaca
ctgcgtctgctgcagctggagagagacgtgactctgctgagagagagcagcctggacacc
agccaccgcacacagaacactgagagactgtctgagaccgccaagcaggacgcagagcgg
gccctgcaggagtttgactcggaggtgaagggtcagtacagtgttgtggagggcttggtg
gtgacgaaggcagtgggcgtgtctgatgccaagaagagggcggagctactccagcaggag
gccaaggagctgctcacccagaccagcggaaaactacagagactcagagagttggagagg
tcatatgcagccaaccagcgtactctagaggccaaggcaggtcagctgtccgggctggag
aaaacggcacgccagctgctcgatgacatcagccagaaagtcatgatctacagcacctgt
tcttag
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integrated database retrieval system
