Oncorhynchus tshawytscha (Chinook salmon): 112216903
Help
Entry
112216903 CDS
T05605
Name
(RefSeq) caprin-2 isoform X1
KO
K18744
caprin-2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112216903
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
112216903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C1q
Caprin-1_dimer
Caprin-1_C
Motif
Other DBs
NCBI-GeneID:
112216903
NCBI-ProteinID:
XP_024232814
LinkDB
All DBs
Position
LG17:14491219..14499287
Genome browser
AA seq
972 aa
AA seq
DB search
MNPVGDTKCAHIGEDLNMVQLSPSPARDASPSPECSEKGRQGSPKAGSPKMGSHGGLSPL
QLALGTSIPNYQGYESYIEDGLICLKHKIRNLEKKKIKLEDYRKRLKHGESLNQDQIDAV
EKYDEVIHNLQFAQELHKTLGGLTQELLKAQKKALRKEQMAKQEVEKRRLCVVLQVKFLL
QTLLQHEHIRKDLLSARNPQLQVTELQSLLELAELLGVKRDNNVSLEEQMESAALVYLDL
LEGTNKAVAGTTYKVLKAKLAKLMDCGYFDCVPPPPSKSPKEVEDPMTKKTVSETASLST
LMMSNKKDVPSREFLNRHYLPDTDPNGCRDTPVTPNWKAEFQAMKEQEPPDSWDMESDST
QPVIQKPWRGAAVFISKVPVTTKKENAEPKQRRAKSKRERDTTAALCVDTPVEVFNSQSS
LPKDPILPKDPILRKQQLEDLMTKIRGSFSFMQDSLLDGEGSPTNGHPRLGRHASGSPSP
LVQRESRRSPVDHLPKTLHSTPLPSKLLPVDDEPNMTNGDGGCLQSCDLDLTTEDLTHVI
AIDPCLLLSESETACPSPTAPPPFYRRESSISITLDEKTSARTPISESGKQSPCNGVVPP
CTPTPTQGQLFSTPPSRRTLSMAPSVPFQTMHSVFKVNAPLLPTGDFKSDIIPYSDSGND
LCYVTTSTQTPPDFAPLEDEHLQSVNQSECLVGSGGQIFLSPSQSGGTMGRSDQSYYRGS
VRGIARGGKGLAHSYFRSSGGHRGGSFIPQAHLYSARDTGYQHNYRRGGGNAGQRHNNSG
WSDSSQVSSPDREGNYSLVDSAHGDSLQGVGMDLTPQVTPHAPHTLMHVPMYPLPQHPQP
LRVAFTAARTANYTPGTLDQPITFDQLHSNLGEMFNTNMGRFICPANGTYVFLFHILKLA
VNVPLYVNLMRNDEVMVSAYANDGAPDHETASNHSILQLYQGDQVWLRLHRGSIYGSSWK
YSTFSGFLLYQD
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgtcggcgacactaaatgcgcacacattggcgaggatttgaacatggtgcag
ctgtctccatccccagcccgggatgcgtctccttcacctgagtgctccgagaaggggagg
caggggagcccgaaggcaggtagccccaagatgggctcccatggtgggctgagtcctctc
cagctagcactgggaacctccatccccaactaccagggctacgagagttacatcgaggac
ggcctcatctgcctcaagcacaagatccgcaacctggagaaaaagaagattaaattggaa
gactacaggaagcgtttgaaacacggggaatcactcaatcaagaccagatagatgcagtg
gagaagtatgacgaagtgatccacaacctgcagtttgcccaggagctgcacaagaccctg
gggggcctaacacaggaactgctaaaggcccagaagaaggcgttgaggaaggagcagatg
gccaagcaggaggtagagaagaggaggctgtgtgtagtgctgcaggttaagttcctcctg
cagaccctgctgcagcacgagcacatcaggaaggacctcctctctgcccgcaacccccag
ctccaggttacagagctacaaagcctgcttgagctcgctgaactactgggggtgaagagg
gacaacaatgtgagtttggaggagcagatggagagcgcagccctggtctacctggacctg
ctggaggggactaataaagctgtagccggaaccacctacaaggtcctgaaggccaagttg
gcgaagctgatggattgcggatactttgattgtgtaccgccgcctccgagcaagagtccc
aaggaagtggaggatcccatgaccaagaagacggtgtctgaaacagccagcctctctacc
ctaatgatgtcaaacaaaaaagacgtgcctagcagagagtttcttaacagacactacctg
cctgacacagaccccaatgggtgtcgagacactcccgttactccgaactggaaggctgag
ttccaggccatgaaggaacaggagcctccggactcgtgggatatggagtctgactccact
cagcctgtaatccagaaaccatggagaggggcggctgtgttcatctccaaagtgccggtt
actaccaagaaagaaaatgctgaacccaaacagagaagagcaaagtctaaaagggagcgg
gacaccacagctgcactttgtgtggacacccctgtggaggtgttcaactcccagtcttcc
ttgcccaaggaccccatcctgcccaaggaccccatcttgcgcaagcagcagctggaggac
ctgatgaccaagatcagaggctccttcagcttcatgcaggattctcttctggatggagaa
ggatcgcccactaacggccatcctagactgggccggcatgcctctggatccccctctcca
ctcgtacagagagagtcaaggagaagcccagtggaccatctccccaaaacattgcattcc
actccattgccttctaaactcctccctgttgatgacgaacccaatatgaccaatggagac
gggggttgtctacagagctgtgacctggacctgactacagaggacctgactcacgtcata
gccattgatccatgtctgctgctgtctgagagtgagactgcctgcccctctcctacagct
cctcctcccttctaccgtagggagtcctccatctccatcaccctggacgagaagacctct
gctcggactcccatctctgaatctgggaagcaatccccctgtaacggggtggtgcctcct
tgtacaccaacccccacccaggggcagctgttttctacccctcccagcagacgtacactc
agcatggccccctctgttcccttccagaccatgcattcggtattcaaggtgaatgccccc
ttacttccgactggagactttaaatctgatattatcccctattcggactccggcaacgac
ctgtgctatgtcaccaccagcacccagaccccaccggattttgctcccctggaggacgaa
cacctacagtcggtgaaccagtctgaatgtctggtgggtagtggtgggcagatcttcctg
tcccctagccaatcaggtggcaccatgggccgttctgaccaatcatactacagaggatct
gttagaggtattgcacgtggtggcaaggggctggcacactcctactttcgctcttctggt
gggcacagaggaggaagcttcatcccccaggctcacctgtacagcgctcgggacactggc
taccagcacaactacaggcgtggtggaggcaatgcaggacaaaggcacaataatagtggt
tggagtgactcctcccaggtgagcagcccagaccgggagggcaactactccctggtggac
tccgcccacggcgactcgctgcagggtgttggcatggacctcaccccccaggtgacccct
catgccccccacaccctgatgcacgtacccatgtacccgctcccccagcatccccagccc
ctccgcgtggccttcacagcagcccgcacagccaactacaccccgggcaccctggaccag
cccatcacctttgaccagctccacagcaacctgggcgagatgttcaacaccaacatgggt
cgtttcatctgcccagccaacggcacctacgtcttcctcttccacatcctcaagctggcg
gtcaacgtgccactctacgtcaacctgatgcgcaacgacgaggtgatggtgtctgcgtat
gccaacgacggggctccggaccacgagacggccagcaaccactccatcctgcagctgtac
cagggagaccaggtgtggctgcggctgcaccgcggatccatctatggcagcagctggaag
tacagcacattctctggcttcctgctctaccaggactga
DBGET
integrated database retrieval system
