Oncorhynchus tshawytscha (Chinook salmon): 112216965
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Entry
112216965 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Hakai-like
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112216965
04131 Membrane trafficking [BR:
otw04131
]
112216965
04121 Ubiquitin system [BR:
otw04121
]
112216965
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112216965
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
112216965
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
112216965
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112216965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_Hakai
zf-C3HC4
zf-RING_UBOX
zf-RING_5
P53_TAD
zf-C3HC4_3
DZR
zf-C3HC4_2
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
112216965
NCBI-ProteinID:
XP_024232903
LinkDB
All DBs
Position
LG17:17855562..17860225
Genome browser
AA seq
487 aa
AA seq
DB search
MDQIDNDLQGTDGSGSLGGPDVRRRIPIKLISKPTIRSKPAPRTQRPMGRQPSKPQAGDE
ESFSFKQEERFDCGTKAGDVFASQRKFPQQMFWDFKLNLIGEKDDIPAHFCDKCGLPIRI
YGRMIPCKHVFCYECALLHEKKGDKMCPGMQLFSCTDPVQRIEQCLRGSLYMCSIVKGCK
RTYLSQRDLQAHINHRHMRAAKALASRQDALHLPPSTEVPDRFRVPPPHLPKTQGHLPPP
LQHGGHDPYGQPPPASHDAPPLSQETFRIATVTTRARSNLITVPIQDDSASSSTSSSRDP
LPPGPGPAPPPHHHPGDYPGQPVVSHPHHMMAPPQQHYGPPPPPPPPINHPMQHPPQGSG
TPHMVYNQAGPPPPMSNAPPPITPPPGHIMGQMPPXMNHPPPGPPPQHGGPPVNXPPPHH
YNPNSMQQFPEDQGTLSPPFNQQGGLSPGMWPAPRGPPPPRMQGPPPQGQMPGPHHPDQS
RYRPYYQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaattgacaatgacctgcaaggcacggacggctcggggagtcttgggggccct
gatgtccgcagacgcatccccatcaaactcatctccaaaccaaccatcaggagcaaacct
gctccccggacacaaagacccatgggcaggcagccctccaaaccccaggccggggatgaa
gagagttttagcttcaagcaagaggagaggttcgactgtggtaccaaggctggggatgtg
tttgcaagtcaacggaagttcccccagcaaatgttttgggactttaagttgaatttgata
ggtgaaaaggatgacattccagcacacttttgtgacaagtgtggtctgcccataaggatc
tatggacgcatgattccatgcaaacatgtattctgttatgagtgtgcgttgctccacgag
aagaagggagacaagatgtgcccaggtatgcagctcttcagctgcacagacccggtccag
cgcatcgaacagtgtctgcggggctccctctacatgtgcagcattgtgaagggctgcaag
cgcacctacctttcccagcgtgacctgcaagcccacatcaaccaccgccacatgagggca
gccaaggccttggcaagccgccaggatgccctgcaccttcccccatccacagaggtacct
gaccgcttccgcgtgcccccgcctcacctgcccaagacccaagggcacctcccgccccct
ctccaacacgggggtcatgacccctacggtcagccaccaccggcttcccatgatgcacct
cctctttcccaggagaccttccgcattgccacagtaactacacgcgcacgcagcaacctc
atcaccgtgccaatccaggatgactccgcttcttcctctacctcttcctcccgtgaccct
ctccctcctggcccgggccctgctccacccccacaccaccatcctggggactaccctggt
cagcctgtagtgtcccatccccaccacatgatggcaccaccgcaacagcactatggccct
ccacctcctccccctccacccatcaaccaccccatgcagcacccgccccagggctctggg
acaccccacatggtgtacaaccaggccggccctcccccgcctatgtccaacgcaccccct
cccattacccccccgccaggacacatcatgggtcagatgccccctnacatgaaccaccct
cctccaggccccccacctcaacacggtggtcctccagtcaacnngccccctccccaccac
tacaaccctaactccatgcagcaattccctgaggaccagggcacactcagtccccctttt
aaccagcaagggggtctgagccctgggatgtggcctgcccctcgagggcctcctcctcca
aggatgcagggccccccacctcagggccagatgcctggaccccatcaccccgatcagtcc
cgctaccgcccttattatcagtaa
DBGET
integrated database retrieval system
