Oncorhynchus tshawytscha (Chinook salmon): 112217117
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Entry
112217117 CDS
T05605
Symbol
apex1
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112217117 (apex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112217117 (apex1)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
112217117 (apex1)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
112217117 (apex1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
112217117
NCBI-ProteinID:
XP_024233185
LinkDB
All DBs
Position
Unknown
AA seq
312 aa
AA seq
DB search
MSKRAKKNEQEAGDGDHDNGTAPAAKKGKKVKEPEAPILYSDPPDKMNSKDGRAANMKIT
SWNVDGLRAWVKKKGLDWVRDEAPDVLCLQETKCAEKSLPDEITSMPEFPHKYWAGSDEK
EGYSGVAMLCKTEPLKVTYGIGKEEHDKEGRVITAEFPTFFLVTAYVPNSGRGLVRLDYR
KTWDVEFKAYLSDLDKRKPLVLCGDLNVAHEEIDLKNSKGNKKNAGFTAEEREGFNQLLA
AGFTDSFRELYPEQANAYTFWTYMMNSRSKNVGWRLDYFVLSSALLPGLCDSKIRNQAMG
SDHCPITLHMVV
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagagcgaagaaaaatgagcaggaggctggagatggtgaccatgacaacggc
acagctcccgctgccaagaaaggaaagaaggtcaaggaaccagaggcccccattctgtac
agtgaccctcctgataagatgaacagcaaagatggtcgtgctgctaacatgaagatcacc
tcctggaatgtggatgggctcagagcctgggtcaagaagaagggccttgattgggtgcgt
gacgaggccccagatgtgctgtgcctgcaggagacgaagtgcgctgagaagtcccttcct
gatgaaatcacctccatgcccgagttcccccacaagtactgggctggctctgatgagaag
gagggctatagcggggtagctatgctgtgcaagactgagcccctcaaagttacctatggc
ataggtaaagaggagcatgataaggagggccgtgttatcactgctgagttccccaccttc
ttcctggtcaccgcctacgtgcccaactctggccgaggcctggtgcgcctggactatcgc
aagacctgggacgtggagttcaaggcctacctgagcgacctggacaagcgcaagcctctg
gtgctgtgtggcgatctgaacgtggcccacgaggagatcgacctgaagaactccaaaggc
aataaaaaaaacgcaggcttcacagcagaggagcgtgagggcttcaatcagctgctggct
gcaggcttcaccgacagcttccgcgagctgtaccccgagcaggccaacgcgtacaccttc
tggacctacatgatgaactctcgctctaagaacgtaggctggcgtctggactactttgtg
ctgtcctctgctctactgccaggcctttgtgatagcaagatccgcaaccaagctatgggc
agtgaccactgccccatcactctacacatggttgtgtag
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