Oncorhynchus tshawytscha (Chinook salmon): 112217314
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Entry
112217314 CDS
T05605
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112217314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112217314
03021 Transcription machinery [BR:
otw03021
]
112217314
03036 Chromosome and associated proteins [BR:
otw03036
]
112217314
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
ARID
112217314
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112217314
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112217314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
112217314
NCBI-ProteinID:
XP_042156558
LinkDB
All DBs
Position
LG18:complement(9951476..10061331)
Genome browser
AA seq
2455 aa
AA seq
DB search
MAAQVATAPTSNGKKRSNLASSLSQDLKSGKSGVVGGAVLGVGNGTNVHAMNNVERHELN
PTSRARASPANNDSNPREKESRDSRSASFSTSNSSMETGMFVSHKVKNVGGEDTPSLHHT
PPQQQPFNQFLQHQQRQIQNNNQQSLHGESGNRQHGESGNRQHGGKGNVVLGNTVERHQQ
QEMLNKNEDDQPSKTEDRLDSRYEHASSGPTNNINTSQGGTSSVSEFNSYYGNGKGGPCF
DQHGGQQSPGSGIMHSVQQNMDQVQQNSHEGYHNNPYNHYPAYRPGYGNSGYGMMSPSRQ
GNNMMGLGSNTAAANHSKAAMAAASSGGANVGGFQRFPGQTQQHPSGATPTLNQLLTSPS
PMMRGYGGGYQDYTNPSAQQQQSSMGLTKDINPQYGSVTHVWGGQQRNHPAMSPGNNGQG
SGRSQVPPMDAMAMKRSQLYGIGNNPYSQQQQGGGGSYPGQPYGSPSPHRYPMGMHGRGQ
VGMSGMQYPQQQQQMVAQYGQQHQGQQGGYCQPQGQSPYFSPPQQQPTAPTQPPYMQPRP
PPPQQDVSQEGYGNRGQSAMTPGKPNHEEMGLSQQDRPSSLPDLSGTIDDLPTGTEVAVS
SAVSASGSTSSQGEQSNPAQSPFSPHVSPRLPGLRSGPSPSPVGSPVGSSQSRSGPISPA
SVPGTQMAPQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQRNTPGPQQSGQGPPVSPHPS
LGGSMHPGSYHQQQQGGPGPSYGSQTSQYGPQGNYPRPPNYGGAPSANYSGPGPGMSNSL
GMNASSPMHGQGPGQPCGSMPAGRGLGPGASGRPYPCATTNTMAPTSPSMPQPAGQGQGM
RPPLPNVNRKPGHEAGPGPNAMQGPNAGSNPSAQGRPPYARSPAYPSQSWPGVRPPLSPS
PHPHPQTSPHPHPHPQYSPHPHYHPQHSPQPHPQHSHHPHPQPHPHYQPQTSPHPYPHPQ
DSPHPQPHPHPRPHPQPHHSPSTHPHHQPHPHPQTSPHPHPRPHHPPHSPSYHPQVSSAK
SHIHPMMQQQQAEQYGQGMTPMPHHPGMNPMGPGGVGPSPGGLYSQQPGANTSGRMTPQG
PHPLYNAPPPSGPMQMGGEGMVGPPDPKRRPPEQHREGNTPAPAIEPPPKPKDRYSSSQC
MSQPPTPCPLSPSPASLSSCHGAQDSRDIISSHPAVAGAWPKTPTSPKPSPATMTNEKIR
ILYEMGGEPERRMWVDRYLAFMEERGTPVPMLPAVGKKPLDLCRLYLSVREIGGLAMVNK
SKKWRELSTHLNVGTSSSSASSLKKQYIHYLFAFECKVERGEEPPLEIPGETKKQAQAHQ
ARIQPPSPANSGSLQGPHTPQSTGSSSMSEMPEGMKRPTPATTPHGHMTPQPGNRNSGGI
RVQDPFSEISDPAFHKRGPMPSGAPYQQSGGSSDPSMRMQYDANKDLYGGPQKGPGGSES
YGPGQMPSGAVQDMYPRGPPSRAMPGMGMGPGPRPQYPYGPGYDRRPDHVMGPEGGMAPP
GGQNNMGPSSGDPSMYSANRYPQQRPHGHESYGQQQYPHGPMPYGSHQPGMYPQQQGYKR
PVGPEVMYGPPAKRHEGEAYSMQQYGGQQPGMYTQYGGNYMGPERRPMQGQYPYPYSRDR
MGATQGPQQHAMMSGGPPASSGASAEGPQLNMWHPRTDMGYPGPYRGQLGQGPPYPGLGR
GLGDDPEGRNSPDGQWPPGPPGQHQPPYPPHSSSASSMPPMASRQPTSYQSNPAMANHIS
RAPSPSPFPRPMGGSGPLSPNNGGPYMASLKKAGMPGSMPGSLGGGMSGQGILPLHRDIS
FPVGSVEATLPKLKARRRLTSKETGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNT
VSSFTLAQLPGFLELIVEYFRRCLISIFGILDEYEVGTEGQRTLLGPIADQEEEPTVPEL
GSQLREEQRDNRPEEAEIEKPTANGSTEEAVPDEKTEEPVEVTVKEEKVEGEESEVGATT
DQSEPPQPEGPPEPRPKQASKYDKLPIKVEEKSAEEDQVEERQGLSLPRGFSSGLLHWKA
GGGDSTAHIQTHFEKRSEETDSKHTEERKVEEGAVVEKTMTETATVDEMLSARPGSQSLS
ERNDLTGTFSFVEGAQTQSPILTLLEDEPRCWDEAPLSTAEPWQDALARRCVCVSNIVRG
LSFIPGNDNDMSRHPGLVLILGRLVLLHHLHPQRRRTPPSYQREEEQGRACSKDEWWWDC
LSALRENTLVTLANISGQLDLSLYPESICLPILDGLLHWMVCPSAEAQDPFTTAGCSSSL
TPQRLVLECLCKLSIQDNNVDLLLATPPFSRQEKLYATLVRHVGERKSQVCREMAVAVLS
NLAQGDPTAARAIALQKGSVGTLIGFLEDCVAMAQHQQGPHSLLHPAPVPHPEPPSVNMM
CRAAKALLAMAKVKENRPEFVLYESRLLDSSLSSVLSSAVAAIMCEVLFKIGRSS
NT seq
7368 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccccaacatcaaatggtaagaaaaggtcgaatttagct
agtagcttgagtcaagatttgaaatctggcaagtctggagtagttggtggagctgtgctt
ggggtaggaaatgggactaacgttcatgctatgaataatgtagaacgccatgaactgaac
ccgaccagtagagctcgagcttctcctgcaaacaacgattcgaatccacgtgagaaggaa
agtagagattctagatcggcgtctttttcgacttcaaattctagcatggagacgggaatg
tttgttagtcataaagtgaaaaatgttggtggtgaagatactccatctctccaccacaca
cctcctcagcaacagccattcaaccaattccttcagcaccaacaacgccaaattcagaac
aacaaccagcagtcgctacatggagaaagtggaaaccgccaacatggggaaagtggaaac
cgccaacatggaggaaaagggaatgttgttttagggaatacagtcgaacgccatcagcaa
caggaaatgctgaataaaaatgaggacgaccaaccgagcaaaacggaagaccggttggac
agcaggtacgagcatgccagttcgggaccaacaaataacatcaacacgtcccaaggtggt
accagctcggtttcggagtttaatagttattatggaaatggtaaaggagggccttgcttt
gatcaacatggcggacaacaaagccctgggtctgggataatgcattcggtacaacagaat
atggatcaagttcaacaaaactcccacgaagggtaccacaacaacccgtacaaccactac
ccggcttaccgacctggctacggtaatagtggatatgggatgatgagtccctctcggcag
gggaacaacatgatgggcctaggcagcaacacggctgctgctaatcatagcaaagctgcc
atggccgctgcctcttctggtggtgctaatgttggagggtttcagagatttccagggcaa
actcagcaacatccttcgggggctaccccaactctaaaccagctactgacatccccgagt
cctatgatgcggggctatggcggtggctatcaagattacactaatccctctgctcaacaa
caacaatcaagcatggggctgaccaaagacataaacccccaatacggttcagttacacat
gtttggggaggacaacaaagaaatcaccctgccatgagccctggaaacaacggacaagga
agcggcagatcacaggtgccacccatggacgccatggccatgaagcgctctcagctctac
ggcataggcaacaacccttactcccagcaacaacagggcgggggcgggtcttaccctggc
cagccatatggatcgccttctcctcaccgctatccaatgggaatgcacgggaggggtcag
gtgggcatgagtggaatgcagtatcctcaacagcagcagcagatggtagcccagtatgga
cagcagcatcaggggcagcagggtgggtactgccagccgcagggccagtccccgtacttc
agccctccccagcaacagcccaccgcccccacacagcccccctacatgcagccacgccca
ccaccaccacaacaggatgtgtcacaggagggctatggcaacaggggccagtctgctatg
acccctgggaagcccaaccatgaggagatgggcctcagccagcaggacagaccttccagt
ctacctgacctgtctggcaccatagatgaccttcctacgggcacagaggtggccgtcagc
tcagcggtcagtgcttcggggtccaccagcagccagggcgagcagagtaacccggcccag
tcgcctttctctccccatgtatccccgcgcctccccggcctgcgcagcggcccctcgccc
tcccccgtgggatcacctgttggctccagccaatcacgctctggcccaatctcccccgcc
agcgtcccaggcacccagatggccccccagacccctgggaacatgtctgatgtgggctcc
cattccaccctgagccagtcccccatgtctcaggagagagggttcccacctgccatgcag
cggaacaccccaggcccccagcagtcgggccaggggccccccgtgtcccctcacccctcc
ctgggaggctccatgcacccgggctcctatcatcagcagcagcaggggggccctggcccc
tcgtacggatcccagaccagccagtacggcccccaaggtaactaccccaggcccccgaac
tacggcggggctcccagtgccaactacagcggccccggccctggcatgagcaacagtttg
ggcatgaacgccagcagccccatgcatggccagggccccggacagccctgtggctccatg
cccgccgggcgaggcttgggtccaggggccagtgggcgcccctacccctgtgccaccacc
aacaccatggcccccacctctcccagcatgccgcagcctgccggacagggtcagggcatg
agaccgcccctgcccaacgttaatcgcaagccgggccacgaggcaggccccggccccaac
gccatgcagggtccaaacgctggttccaacccctctgcccagggccggcctccctacgcg
cgctcccctgcctaccccagccagtcttggcctggggtccgtcctcccctctctccctcc
ccccatccccacccacaaacctccccacaccctcatcctcatccccaatacagcccccat
ccccattatcatccccaacacagcccccaacctcatccccaacacagccaccatcctcac
cctcaaccccatccccattatcagccccaaacctccccacacccctatcctcacccccaa
gacagccctcatcctcaaccccacccacatcctcgaccccaccctcaaccccatcactct
ccctccacccacccccatcatcagccccaccctcacccccaaacctccccacacccccat
ccccgaccccatcaccctccccactctccttcctaccacccccaggtcagcagtgcaaag
agccatatccatcccatgatgcagcagcagcaggctgagcagtacgggcagggaatgacc
cccatgccgcaccacccaggcatgaaccccatgggccccggaggtgtgggccccagccct
ggaggcctctacagccagcagccaggggctaacacctctggaaggatgaccccacagggg
ccccacccgctctacaacgcacccccaccctcagggcccatgcagatgggaggagagggg
atggtgggtccccctgaccccaaacggaggcccccagagcagcacagggagggcaacact
cctgcccctgccatcgaaccaccacctaaacccaaggaccgctacagctcctctcagtgt
atgtcccagccccccaccccatgtcccctgtcccccagccctgctagtctgtcctcttgt
cacggggcgcaggacagcagagatatcattagcagccaccctgctgtcgctggggcctgg
ccaaagacccccaccagccctaaacccagcccggccaccatgaccaatgagaagatccgc
atcctgtatgagatgggcggggagcccgagaggaggatgtgggtggaccgctacctggcc
ttcatggaggagaggggcacgcccgtacccatgctgcctgccgtgggcaagaagcccctg
gacctatgccgcctctatctgtctgtccgagagataggaggcttggctatggtgaacaag
agtaagaagtggagggagctgtctacccacctcaacgtgggcacgtccagcagctccgcc
agctctctgaagaagcagtacatccattacctgtttgccttcgagtgtaaagtggagcgg
ggagaggagccgccgctggagatcccgggagaaaccaagaaacaggcccaggcgcaccag
gctaggatccagccgccctcaccagccaactccggctccctacagggcccccataccccc
cagtctacaggcagcagctccatgagtgagatgccagagggtatgaagcgcccgacccca
gccaccacaccccacggacacatgaccccacagccaggaaacaggaacagtggtggtatc
cgtgtccaggatcccttctcagagatcagtgaccctgccttccacaagcgagggcctatg
ccctctggcgccccctaccagcagagtggcggtagttcagacccctccatgaggatgcag
tacgacgccaacaaggacctctatggagggccccagaaagggccagggggcagtgagtcc
tatggaccaggtcagatgcccagcggtgccgtgcaggatatgtacccccgtggtcctccc
tcaagagccatgccagggatgggcatgggccccggcccgcggccacagtacccctacggg
cctggctacgacagaagaccagaccatgtgatgggtccagaggggggtatggctccccct
gggggtcagaacaatatgggaccttccagcggtgaccccagcatgtactctgccaacaga
taccctcagcagagaccacatggacatgagagttacgggcagcagcaataccctcacggc
cccatgccctacggctctcaccagcctggaatgtatccacagcaacagggctataagagg
ccagtaggaccagaggttatgtacggtccccctgctaagcgccatgagggtgaggcctac
agcatgcagcagtacggaggacagcagccaggcatgtacacccagtacggagggaattac
atggggccagagcgcaggcccatgcagggccagtacccttacccctacagccgagaccgc
atgggggccacccaggggccacagcaacacgccatgatgagtggtgggccccctgcttct
tccggagcctctgcagagggcccacagcttaacatgtggcaccccaggacagacatgggc
taccccgggccttaccgtggccaactgggccaggggcccccttaccctggtttgggacgg
ggcctgggggatgacccagagggtaggaactccccagatgggcagtggccccccggacct
ccaggccagcaccagcccccgtatccaccccactcctcctctgcctcctccatgccccca
atggcatccagacagcccacctcctaccaatccaaccccgccatggccaaccacatctct
agagcccccagcccctcgcccttcccccggcccatggggggatccgggcccctgtccccc
aacaatgggggcccctacatggcatctctgaagaaggcagggatgcccggatccatgcca
ggctcactcggcggagggatgtcagggcagggcattctacctctccacagagatatcagc
ttccccgtggggtcagtggaggccaccctgcccaaactcaaggcccgacgcagacttacc
tccaaggagaccggaactccggaggcgtggcgcgtgatgatgtcccttaaatcaggtctg
ctggcggagagcacgtgggccctggacaccatcaacatcctgctgtatgacgacaacact
gtgtcctccttcaccctcgcacagttgcctggcttcctggagctgatcgtggagtacttc
cgccggtgcctgatctccatctttgggatcctggatgagtatgaggtgggcacagaggga
cagagaacgctgctaggaccaatcgcagaccaggaggaagagcctaccgttccagagctc
ggcagccaattacgcgaagagcagagggataacaggccagaagaggcggagatagagaag
cccacagccaacggcagcacagaggaggcggtcccagacgaaaagacggaggagcctgtt
gaggtgactgtgaaagaggagaaggtagaaggggaagaatctgaggtgggggcaaccacg
gatcagtctgaacctccccagcccgaggggcccccagagccgaggcccaaacaggccagt
aagtacgacaagctgcctatcaaggtggaggagaagagtgcggaggaggaccaggtggag
gagcgccagggactcagcctgcccaggggcttcagctccggcctgctgcactggaaggct
ggagggggggactccacggcccacatccagacacacttcgagaaacgcagcgaagagacg
gacagcaagcatacagaggagaggaaggtggaagaaggggccgttgtagagaagaccatg
actgagacagccaccgtggacgaaatgctgagtgcccgaccaggctctcagtctctgtca
gagaggaacgatcttactgggaccttctcctttgtagaaggggcgcagacccaaagccct
atcttgaccctgctggaggacgagcctcgctgctgggacgaggcgcccctctccacggcc
gaaccctggcaggacgccctggcccgccgttgtgtctgcgtctccaacatcgtccgcggc
ctctccttcatcccagggaacgacaacgacatgtcccgccacccaggcctggtgctgatc
ctggggcggctggtccttctgcatcacctgcacccccagaggaggaggacgccccccagc
taccagagagaggaggagcagggccgggcctgcagcaaggacgagtggtggtgggactgt
ttgtcagccctcagggagaacactctggtcaccctggctaacatctcaggtcaactagac
ctgtccctctacccagagagcatctgtctgcccatcctggacgggctgctccactggatg
gtgtgtccctctgccgaggcccaggaccccttcaccacggcgggctgctcctcctccctc
acacctcagagattggtgttggagtgcctgtgcaagctgagcatccaggacaacaacgtg
gacctcttgctggccacgccgccgttcagccgccaggagaagctctacgccaccctggtg
cgccacgtgggtgagcggaagtcccaggtgtgccgggagatggcggtggctgtgctctct
aacctggcacagggggacccgacggcggcgcgtgccatcgctctgcagaagggcagcgtg
ggaacactcatcggcttcctggaggactgcgtggccatggcccagcaccagcagggaccc
cacagcctgctacacccagcaccagtcccccaccccgaaccccccagcgttaacatgatg
tgcagggccgccaaggctctgctggccatggccaaggtgaaggagaaccggccagagttt
gttctctacgagagcaggctactggatagctctctgtcctctgtgctgagctctgccgtg
gcggccatcatgtgtgaagtactgtttaagattggacgctcctcgtga
DBGET
integrated database retrieval system
