Oncorhynchus tshawytscha (Chinook salmon): 112217338
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Entry
112217338 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM9
KO
K10649
tripartite motif-containing protein 9/67
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112217338
04121 Ubiquitin system [BR:
otw04121
]
112217338
Membrane trafficking [BR:
otw04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
112217338
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112217338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
fn3
zf-B_box
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
PRY
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
112217338
NCBI-ProteinID:
XP_042156652
LinkDB
All DBs
Position
LG18:17009737..17033144
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AA seq
686 aa
AA seq
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MDEELKCPVCGSLFKDPILLPCSHNVCLACARNIIVQTPEGETPPQNRASGNSDYDYLDM
DKMSMYSETDSGYGSYTPCLKSPNGIRVFPPTLVHRHCSITCPLCHRSVSLDERGLRGFP
RNRLLEAIVSRYQQNRSANVKCQLCDRNPVDATVMCEQCDVFYCTPCQQRCHPSRGPLAK
HRLLPPTQSPAAGSLQMPAGTIRKQGTCADHDMENFSMYCVNCKTPVCMKCLEGGKHGSH
DLKPLAAMWKQHKCQLSQALNGVSDKAKDAKEFLMQLKNMLQQIQENGVEFEACLVAQCD
ALIEALTRQKAKLLTKVTKEREYKLKVVRDQITHCTMKLRQTTGMMEYCLEVIKENDPSG
FLQISDALIKRVTSSQDQWVKGALEPKVGPEFDLTLNTDPLLQTILQLDFVQSKVESATV
PPAPLLQLEKCCTRNNSATLAWRVTVPPNNPIEGYILELDDGNGGQYREVYVGKETVCTV
DGLHFNSSYNARVKAYNSTGVGPYSKTVVLKTSDVAWFTFDPTSAHRDIMLTNENRTVSC
NSYDDRVVLGTAAFSKGVHYWELRVDRYDNHPDPAFGVARINTMKDMMLGKDDKAWAMYV
DNNRSWFMHNNSHTNRAEGGISKGATVGILLDLNKYTLTFFINKEQHGPVAFENLEGVFM
PAVSINRNVQVTLLTGMEVPKNIKQQ
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaattaaaatgccccgtttgcggctctcttttcaaggatcctattctttta
ccctgctcacacaatgtgtgtttggcgtgcgcccgaaatatcattgtacagacgccagaa
ggcgaaacacctccgcaaaaccgtgcctccgggaactcggactacgattatttggatatg
gacaaaatgagcatgtatagtgaaacggacagcggctatggatcatacacgccgtgcctc
aagtctccaaatgggatacgggtgtttcctccgactctggtgcaccgccactgctccata
acgtgtcctctctgtcaccgtagtgtctctctggatgagcggggactgaggggcttccca
cgtaaccggctactggaggcgatcgtgtctcgttatcagcagaaccgctctgccaacgtg
aaatgtcagctgtgtgaccgcaaccctgtcgatgccactgtgatgtgcgaacagtgcgac
gtgttttactgcacaccatgccagcagcgatgccacccttcccgtggaccgctggccaaa
catcgattactgccgccgacccaatcgcccgcggctggaagcctgcagatgcccgccggc
accatacgcaaacagggaacgtgtgcagaccatgacatggagaactttagcatgtactgc
gtcaactgcaagactccagtgtgtatgaagtgtcttgagggtggcaagcacgggagtcat
gatttaaaacctttagctgccatgtggaaacagcacaagtgtcaactctcccaagctttg
aacggtgtgtcagataaagccaaggatgccaaggaattcctaatgcagttgaagaacatg
cttcagcagatacaggagaacggggtggagttcgaggcctgcttggtggctcagtgtgac
gccctgattgaggctctgacgaggcagaaagccaagctcctcaccaaggtcaccaaggag
agggagtacaagctcaaggtggtgcgtgaccagatcacacactgcactatgaagctgcgt
cagaccacgggcatgatggagtactgtctggaggtgatcaaagagaacgaccccagtggc
ttcctgcagatctcagatgcgctgattaaacgtgtgacgtcgtctcaggaccagtgggtc
aaaggggctttggagcccaaggtgggccctgagtttgacctgaccctgaacacagacccc
ttgctgcagaccatactacagctggactttgtccagagcaaagtggagtctgccacggtg
cccccggcccccctgctgcagctggagaagtgctgcacccgcaacaacagtgccaccctg
gcctggagggtcactgtgccccctaacaaccccatcgaaggctacatcctggagctggac
gacggcaacgggggtcaatacagggaggtgtatgtagggaaggagactgtgtgcactgtg
gacggcctccacttcaacagctcctacaatgccagagtcaaggcctacaactccaccgga
gtggggccctatagcaagactgtggtgctgaagacatctgatgtggcctggttcaccttc
gaccccacctcggctcacagggacatcatgttgaccaatgagaaccggacagtgagctgc
aacagctacgatgaccgtgtggtcctggggacagccgccttctccaagggggtccattac
tgggagctcagggtggatcgctatgacaaccacccggaccctgcgttcggggtggcgagg
atcaatacgatgaaggacatgatgctggggaaggatgataaggcctgggccatgtacgtg
gacaacaaccgcagctggttcatgcacaacaactcccacaccaacagggccgaggggggc
atctccaagggtgccactgtgggcatcctgctggacctgaacaagtacactctaacgttc
ttcatcaacaaagagcagcatggccccgtggcttttgagaacctggagggagtcttcatg
cctgctgtcagcatcaacagaaatgtccaggtgaccctactaacaggaatggaggtgcca
aagaatattaagcagcagtag
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