Oncorhynchus tshawytscha (Chinook salmon): 112217540
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Entry
112217540 CDS
T05605
Name
(RefSeq) probable ribonuclease ZC3H12D isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112217540
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
112217540
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
112217540
NCBI-ProteinID:
XP_024233654
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All DBs
Position
LG18:complement(13950159..13966298)
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AA seq
615 aa
AA seq
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MDQQHGKVERFLKLGYSHSDIVRVLESLRHDAQTNDILEELIKTCQTPTTTTTTPSIPAS
RSAYSSPQLIPRGCSSPQPSQPLWPSSATDRDPTGGFRPVVIDGSNVAMSHGNKQVFSCR
GLLLAVRWFLERGLRDITVFVPLWRKEQPSPEAPMTADQHILHELEKRTILVYTPSRCVN
GKRVVCYDDRYIVKLAYESDGIVVSNDNYRDLQIERPEWKTFIEERLLMYSFANDKFMPP
DDPLGRNGPTIDNFLMKKQWTPENKQQHCPYGKKCTYGVKCKFYHPERSNQSQLSVADEL
RAKSKPTAQTDRERSFLPSGPSPALIQEVSQEAHPYISPYELDLTTTHLYRYLSTPPPLI
KEEHSHSHSHRASPSDQFTSQRKTGSPTLHHRSSLRLCPSPDTDEAFSSLEASLSRLYVQ
DQTNNTKGPVVSYTYSSGVANCSQHSGDFYPSSTSSSHASNQQRLSLGRPSSAWDAPQKL
PQCGCDDSQSFECSPCMYRQQHLQSKLGGCSYAVHSNHIHFTEQQYFQSPPPQRQSHSLP
EHSPGQGLSGERVGMTRSNGGKAPESEQRRSVKNQLSTLFPHSMVDYVMSVYPHTLNMSE
LVPLIQRFRISHIPF
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggaccagcagcatgggaaagtggagcgcttcctcaagctgggctactcccacagtgac
attgtgcgcgtgttggagagcctgcgccatgacgcccagacaaacgacatactggaggag
ctgatcaagacctgccagacccccactaccactaccaccaccccatccataccagccagc
cgctcagcctactccagcccacagctgatcccccgaggctgcagctctccccagcccagc
cagcccctgtggcccagctcagctacagacagggatcccactgggggattcagaccagtg
gtcattgatgggagcaatgtggccatgagccatggtaacaagcaagtgttttcatgccgg
gggctgctgctggcagtcaggtggtttctggagaggggtcttcgtgacatcactgtgttc
gtgcccctgtggaggaaggagcagcccagtcccgaggcccccatgacagcagatcagcac
atcctccatgagctggagaagaggacgatcctggtgtacaccccgtcacgctgcgtcaac
gggaagagagtggtgtgttacgacgaccgctacatcgtcaagctggcctacgagtccgac
ggcatcgttgtgtccaatgacaactacagagacctgcagatagagaggccagagtggaag
acgttcatagaggaaaggctgttgatgtacagcttcgccaatgacaagttcatgcctcca
gatgatcctctgggaaggaatggcccaacgattgacaactttctgatgaaaaagcagtgg
accccagaaaacaagcagcagcattgcccgtatggaaagaagtgtacttacggagtgaag
tgcaagttctaccacccagagcgctccaaccaatcacagctgtctgtggcagatgagctg
agagccaagagcaaacctactgctcaaacagacagggagcggtcatttctcccctcaggc
cccagccctgctctgatccaggaagtcagccaggaggcccacccttacatatccccttat
gagctggatctaactactactcatctatacagatatctatccacaccgcctccccttata
aaagaagagcattcccattcccattcccacagggcttcgcctagcgatcagttcaccagc
cagagaaaaacaggcagcccaactctacaccacaggtccagcctccgcctctgccccagc
ccagacactgacgaggccttcagctccctggaagcctccctgtccagactctatgtccag
gaccagaccaacaacaccaaggggccagtggtgtcctacacctacagcagtggggtggcc
aactgcagccagcacagtggggacttctacccttccagcacttccagtagccacgccagc
aaccaacagaggctcagcctgggtagaccctcctcagcctgggatgccccgcaaaaactg
ccacagtgtggctgtgacgactcacaaagctttgagtgcagcccgtgcatgtacagacag
caacatctccagtcaaagctaggagggtgctcctatgctgtacacagtaaccatatccat
ttcacagagcagcagtacttccagagtcctcccccacaaaggcagagtcacagcctccca
gaacacagcccgggacagggcctctctggcgagagagtggggatgaccaggtccaatgga
ggtaaagctccagagagtgagcagaggaggagtgtgaagaaccagctcagcaccctcttc
ccccacagcatggtagactatgtgatgagtgtgtacccacacaccctcaatatgtcagag
ctggtgcctctgattcagaggttccgaatcagccacattcctttctaa
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