Oncorhynchus tshawytscha (Chinook salmon): 112217594
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Entry
112217594 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: afadin-like
KO
K05702
afadin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04520
Adherens junction
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112217594
04530 Tight junction
112217594
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
PDZ_2
ASPP1-2_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
112217594
NCBI-ProteinID:
XP_042156649
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All DBs
Position
LG18:complement(16667159..16799898)
Genome browser
AA seq
1862 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERKLDLDEKPLVVQLNWNKD
DREGRFVLKNENDIIPKKMQSNGPEREKEGVIQNFKRTLSKKEKKKEKKREKEAHIPDGD
EQALNREDGENSRLAAEVYKDMPENSFTRTISNPEVVMKRRRQQKLEKRMQEFRSSDGRP
DSGGTLRIYADSLKPNIPYKTILLSTTDMADFAVVEALEKYGLEKENPREYCIARHTDDK
SGKEIVLDDTECPLQIFRDWPNDRGALVFQLKKRPPDYVPKKGRKPEDKGLRGKGMDGTL
YGSLPPEKLPYLVELSPGRGNHYGYYTYQHLEDGSDSRDKPKLYRLQHSVTEVGSDTTDD
GSIQLFGPGILPHHCKLMHTEGLVTVTPHSLEAETYVDGQRVTETTVLRSGATLQFGASH
VFKFVDPSYDHSMGKGGPGPMMRGRHKSGSVSETTFDLQGDIHSGTALPASKSSGKLDME
RSANGSERGMVKPMIRGEQQDGRSPDILSPELTLPASIEFRDNSEDAFLSAIINYTNSST
VHFKLSPTYVLYMTCRYVMSSHYRPDVSPSERTHKVIAIVNKMVSMMEGVIQEIPEGAQK
QKNIAGALAFWMANASELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVQCLQSDLNN
YMPAFLDDPEEQNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFN
KLAMEADSGLCSHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSM
QDVQNIHNTCFKLNSLQLNALMTNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGRE
VQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLDPLCQRGFCRLTPHPRSPGTWTIH
FEGADCDSHFFADNSDLQMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQDKLGIYIKSVVK
GGAAEVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATL
LNQPSPMMPRALQGGRDKNGKLRPKSEGFELYNNSVQNGSPESPQGDWQAYPEPKKLSGE
ERLLKNRADHRSSPNVANQSQSPGGNTVYPGGPGTKITSVSTGNLCADDEPSPPRPEAYP
IPTQTYPREYFTIPASKSTDRMGPAAGQLYTDDRGPPGSMEDHHNSSIAIQRMGHSQEEL
CDLPGGYPPAPLRPEDLVHLQQQQQREGDYQRGSGEHWVNHHQVSSSVESSTSSQEHLNY
SSNKTQSNHKSGPGRWKTPGPIAPHPGPVAQATRTDLPPPPPPPVHYQDFDSQPDLPLXP
PPSASQQQAAAADRKKREEQQRWYEKEKARLEEERERKRREQERKLGQVRNPSMPVAHNN
NQHGGTLPPPTQHYQMPPPQSPMPMQQVPLPYFPPQGQQQAQQQQPPRPEKLSTLPRATT
LPPQGNPMDTVIRELLPQQQPRTIERRDLQYITISKAALSSSDSLSPDPWKRDAREKLEK
QQQLHIVDLLDREIQDLQAKPERTAEESDRLRKLMLEWQFQKRLQESKQSDEEDEEDDDE
DVDSMMIMQRLEAEKRARLQDEERRRKQQLEEIRKREAEDRAKQEEERRWREEERARREV
DEKRRQEEEYYTRLEEGRRRQHEEAERKLLTPDEPGLYRPPLPRDYQPQPPSHCIPRNTA
TNAPPPPPQRNASYLKTQVVSPDALYTAKFVSYNDEEEDDAAGFHSYTGNATGVVGSEEG
YKDLREKWTKGGQEQENTLTGEAPESMTFKERQRLFSQGKEVSNKVKASRKLMELENELN
TK
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagcagggaggaggagcggcggaaactagctgacatcattaaccactggaac
gccaaccggctcgacctgttcgagatcagccaacccaccgaggacttggagttccacggc
gtgatgcgtttctacttccaggaccgcgtggcggggaactttgccaccaagtgcatccgc
gtgtcctccacggccaccactcaggatgtcatcgagacgctggccgagaagttccggccc
gacatgagaatgctctcctcgccaaaatactccctctacgaggtccatgtcagtggggaa
gaacggaagctggacctggatgagaagccactggtggtgcagctcaactggaacaaagac
gaccgcgagggacgcttcgtcctcaagaacgagaacgacatcatccccaagaagatgcag
agcaacgggccggagagggagaaggagggagtcatccagaacttcaagcggacactgtcc
aagaaagagaagaagaaggagaagaagagagagaaggaggctcacattccggacggagat
gagcaagcactgaacagagaagatggagagaactccagactggcggcggaggtgtacaag
gacatgccggagaacagcttcaccaggaccatctctaaccctgaggtggtgatgaagagg
aggcggcagcagaaactggagaagaggatgcaggagttccgcagcagcgacggcaggccc
gactcgggggggacgttgaggatctatgcagacagtctgaagcccaacattccttataag
accatcctgctgtccacgacagacatggcagactttgctgtggtggaggccctggagaag
tacggcctggagaaggagaacccccgggagtactgcatcgccaggcacacagatgacaag
tctgggaaggagatcgtcctggacgatacggagtgtcctcttcagatcttcagagactgg
cccaatgaccgaggagccctcgtgttccagctgaagaagagacctccagactatgtgcct
aagaaaggccggaaaccagaggacaagggcctcagagggaagggcatggacgggaccctg
tacggctctctacccccagagaaactgccgtacctggtggagctcagcccagggagggga
aatcactatggctactacacgtatcagcacctggaagacggctccgactccagggacaaa
ccaaagctctaccgtctgcagcacagtgtcactgaggtgggctcagacacgacagacgac
ggctccatccagctgtttggtccaggtatcctgccccaccactgcaaactgatgcacaca
gagggtctggtgacagtgacgccacacagtctggaggctgagacctacgtggacggccag
cgtgtcaccgagaccaccgtgctgcgaagcggagccacacttcagttcggcgcgtcccac
gtcttcaagtttgtggaccccagctacgaccacagtatgggcaagggaggtcccggaccg
atgatgagaggaaggcacaagtcagggagtgtttctgagacgacctttgacctgcaaggg
gacattcacagtgggacggccctccccgccagcaagagctccggtaagctggatatggag
cgttccgccaacggcagcgagagaggcatggtcaaacccatgatccgcggggagcagcag
gacggcaggtccccggacatcctgagcccagaactgacgctgccggccagcatcgagttc
agggacaactccgaagatgcctttctgtcggctatcatcaactacaccaacagctccact
gtgcacttcaagctgtcccccacctacgtactgtatatgacctgtcgctacgtcatgtcc
agccactaccggcccgacgtcagtccctcggaacgcactcacaaggtcatagccatcgtt
aacaagatggtgagcatgatggaaggagtcatccaggagattcctgaaggggcccagaag
cagaagaacattgcgggggccctggccttctggatggccaatgcctcagagctgctcaac
ttcatcaaacaggacaaggacctgtcgcgcatcacactggacgcccaggacgtgctggca
cacctcgtccagatggccttcaagtacctggtccagtgtctgcagtctgacctgaataat
tacatgcctgcgtttttggatgacccagaggaacagaaccctcagaggcccaaaatagag
gacgttctgcacaccctgacgggcgccatgtcgctgctgcgccgttgccgtgtcaacgcg
gcgctgaccatccagctgttctcgcagctcttccacttcatcaacatgtggctgttcaac
aagctggcgatggaggccgactctgggctgtgttcacactactggggcgccatcctccgc
cagcagctcagccacatcgaggcctgggcagagaaacagggcctggagctggccgccgac
tgccacctcagtcgcatcgtacaggctacaactctcctcaccatggacaagtactccatg
caggacgtgcagaacatccacaacacctgcttcaagctgaactccctgcagctcaacgcc
ctcatgaccaactaccactgtgctcccgacgagccttacatcccccccgagctgatagac
cacgtggttgctgtggcggagaacacggcagatgagctggcccgtagcgacggccgagag
gtccagctggaggaggaccccgacctgcaactgcccttcctactgcccgaggacggctac
tcctgcgacgtcgtgcgcaacattcccaacggattccaggagttcctggaccccctttgt
cagagaggattctgtcggctaacccctcacccccgctcccctgggacctggaccatccac
tttgaaggagccgactgcgacagccacttctttgcagacaactccgacctgcaaatgcgg
aaggaaccagaagttgtgacggtcaccctgaagaagcacaatggcatgggcctcagcatt
gtggctgccaagggtgctggacaggacaagctcgggatctacatcaagtctgttgtgaag
ggaggtgcggctgaagtggacggtcgtctggctgcaggggaccagctgctgagtgtggac
ggccgcagcctggtgggcctctcccaggagagggctgcagagttgatgacgaggacaggc
tctgtggtgacactggaagtggccaaacagggtgctatttaccacggcctggccacactc
ctcaaccagccttctcctatgatgcccagagcgttacaaggagggcgtgataagaatggt
aaactgagaccaaagagtgaaggctttgaactgtacaacaactcagtccagaacggctct
ccagagagcccccagggtgactggcaggcctacccagaaccaaagaagttgagcggggag
gagagactactgaagaaccgggccgaccaccgctccagccccaacgtggccaaccagagt
cagagtccaggaggaaataccgtctacccaggaggacctgggacaaagatcacctccgtc
tccacgggcaacctttgtgctgatgacgagccctctccacctcgtcccgaggcctaccca
atccccactcagacctaccccagggaatacttcaccatcccagcctccaagtctacagac
cggatgggcccggccgcggggcagttatacactgacgacaggggccctcctggctccatg
gaagaccaccacaacagcagcatcgccatacagcggatgggccactctcaggaggagctg
tgtgacctcccagggggctaccctccagcccccctgcgtcctgaggacctggtccacctg
cagcagcagcagcagagagagggtgactaccagcggggcagtggggaacactgggtcaac
caccaccaggtctcctcctctgtggagtcctccacttccagccaggagcacctcaactac
tcctccaacaagacccagagcaaccacaagagtggcccaggacgctggaagacccctggc
cccatcgccccgcacccaggccccgtggctcaggccacacgcacagacctcccaccccct
ccaccgccccctgtacactaccaggactttgattcccagcccgacctgcccctanncccc
cctccctcggcctcccagcagcaggcagcagccgccgaccgcaagaagcgcgaggagcag
cagcgctggtatgagaaggagaaggcccggttagaggaggagagggagaggaagaggagg
gaacaggagaggaagctgggacaggtccgtaacccatccatgcctgtagcccacaacaac
aaccaacatgggggcacactcccccctcctacacagcactatcagatgccccctccccag
tcccccatgccaatgcagcaggtgcccttgccctacttccccccccagggccaacagcag
gcccagcagcagcagccccccaggcctgagaaactgtccactctgcccagagcaacgacc
ctgccccctcagggtaacccaatggacacagtgatcagagagctgctcccccagcagcag
ccccgcaccatcgagcgccgggacctgcagtacatcaccatcagcaaggcggcgctgtcc
tccagcgacagcctgtccccagacccctggaagagggacgcccgggagaagctggagaag
cagcagcagctgcacatcgtagacctgctggacagggagatccaggacctgcaggccaag
ccggagcgtacggccgaggagagcgaccggctcaggaagttgatgctggagtggcagttc
cagaagagactgcaggagtccaagcagagtgatgaggaagatgaggaggatgacgacgag
gacgtggactccatgatgatcatgcagcggctggaggcggagaagagagcaaggttgcag
gatgaggagcggcggcggaagcagcagctggaggagatccgtaagcgcgaggcggaggac
cgggccaagcaggaggaggagagacgctggagagaggaggagagggccagacgagaggtc
gatgagaagaggaggcaggaggaggagtactacacacgtctggaggaagggcggcgccgg
cagcacgaggaggccgagcgcaagctgctgacccctgacgagcctggtctgtacagacct
cccctccccagggactaccagcctcagcccccctcccactgcatcccccgcaacactgcc
actaacgctccaccacccccgcctcagagaaacgcatcctacctcaaaacccaggtcgtc
tcccctgacgccttgtacactgccaagtttgtctcgtacaatgacgaggaggaggacgac
gctgcaggatttcattcatacactggaaacgcaaccggggttgtaggatcagaagaaggt
tacaaggacctgcgagagaagtggacaaaaggtggtcaagaacaggaaaacactttaact
ggagaagcgccagagagtatgaccttcaaggagcgccagcggctcttttcccaagggaag
gaggtgtctaacaaagtcaaggcctcacggaaactcatggagctggaaaatgaactcaat
acaaagtag
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integrated database retrieval system
