Oncorhynchus tshawytscha (Chinook salmon): 112217636
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Entry
112217636 CDS
T05605
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112217636 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112217636 (smarcc2)
03036 Chromosome and associated proteins [BR:
otw03036
]
112217636 (smarcc2)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112217636 (smarcc2)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112217636 (smarcc2)
PBAF complex
112217636 (smarcc2)
GBAF(ncBAF) complex
112217636 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
112217636
NCBI-ProteinID:
XP_024233829
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All DBs
Position
LG02:32710000..32724229
Genome browser
AA seq
1063 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTSSSHVVVP
IPASLEEEEWVRLVMKRDKQVLLHWGYYPDSYDTWISASEVEAAVEEAPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPPPQESKKKNTKKGCGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLP
KTANTKKDSESTPVKGGTMTDLDEQEDESMETAGKEEEEGSPSVKGEPVKGSDLHEDNVT
EQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQ
EYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTP
SSLVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSKTAASAM
RDWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDTSSSLGP
LAYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRR
VEEAARTSGRQDPLYGLEGSGIAGTSLEEGEKPEESSEESKSDSQSSEEKRETKENKEGA
MEEGEKQGENGKKEEERGREGEGEGEQEAEKTDSEMGDGEKDKEGKEGSEESQREGESEG
ERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQQHSQTGGP
HSAPAPTGPPPPPQGPSATQSQPTLSTPAPQPAPSPAPPTTSIPSSAQPAEAQPPPSGPH
TSPPRPPGQPPTAHSSTTPTLHEPSAPLPEDTHHSSAPVPPPQ
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaagcgtctgataca
gtctcgcagttcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctggtggtccagctgctgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggttgccgatgaagagt
ttcctggactttaagtctggtggggctctctgccacattctggctgcagcctacaagttc
aagagcgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatctctagtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctactggggaaactgaaggacatcatc
aagaggcaccagggctcagtgactgaagacaagacgtccagctcccatgtggtggttccc
atccctgccagtctggaggaggaggagtgggtgcgtctggtaatgaagagagacaagcag
gtgctgctccactggggatactatcctgacagctatgacacctggatctcagccagtgag
gtggaggctgctgtggaagaagcgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctagaccttgaccagtttaatgagtggatgaatgaggaggactatgaggtgggg
gaggggggccccaagaggaagagaatctcagccaagaccctaacggatgaggtcaccacc
ccaggggacgagcgtcgtgacaagaagcccggcagtgccaagaagaggaagcgctcgccc
tccccctcgcccaccccaccaccccaggagagcaagaagaagaacacaaagaaagggtgt
gggcccaccaccccgtacactaagtctaagcgaggccagagagaggaggagccggaggat
ctgactaaagatctggatgaaccatcacctgtacctgcagtggaggaggtcaccctacct
aagacagccaacactaagaaagactctgagtcaacaccagtaaagggaggtaccatgaca
gacctggatgagcaagaggatgaatccatggaaactgcaggaaaggaggaggaggagggc
tctccgagtgtgaagggagagccggtgaaagggtcggaccttcatgaggacaacgtgacc
gagcagacccaccacatcattatccccagctatgctgcctggttcgactacaacagtgtc
catgctatcgagcgtagagccctcccagagtttttcaacggcaagaacaaatccaaaacc
cctgagatttacctggcctataggaacttcatgatagacacttacaggctgaacccgcag
gagtaccttacctctaccgcctgtcgtaggaacctggccggagacgtgtgcgcaatcatg
agggtgcatgcgttcctggagcagtggggtctgatcaactaccaggtggactcagagagc
cgtcccacccccatgggccccccgcccacctcccacttccacgtcctggctgacaccccc
tccagcctggtgcccctgcagcccaaggcctcccagactccggcggcccagcagattctg
tccttcccagacaaggtgaaggagaagcagccagccgacctgcagaactttggcctgagg
acagacatgtacagcaagaagactgggcctcctaagagtaagactgctgccagcgccatg
cgagactggaccgaacaggagacactactgctgctagagggtctagagatgtacaaggat
gactggaacaaggtgtcggagcacgtgggctcacgtacccaggacgagtgtatcctgcac
ttcctgcgtctgcccatcgaggacccatacctggaggacacgtcctcctccctgggcccc
ctggcctaccagcccgtccccttcagccaggcaggcaaccccgtcatgagcaccgtggcc
ttcctggcctccgtggtggacccccgcgtggcctccgcagccgccaaatctgccctggag
gagttttcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagg
gtggaagaggcggcgcggaccagtggcagacaggaccccctctacggcctggaaggcagc
ggcatcgcaggcaccagcctggaggagggagaaaaacctgaagagagcagtgaggagagt
aaaagtgacagccaatccagtgaagagaagagggagaccaaggagaacaaagagggagcc
atggaagagggggagaagcaaggagaaaacgggaagaaggaggaggagagaggaagagag
ggagaaggagagggagagcaagaggctgagaagaccgactcggagatgggtgatggagag
aaggataaggaagggaaggagggctcggaggagagccagagagaaggagagagtgaggga
gagaggaaggctaaggtggagcgggatgtgggagaggggaacttggctaccgctgctgcc
tctgccctggctgctgctgccgtcaaagccaagcacctggctgctgtggaggagaggaag
atcaagtctctggtggctctgctggtggagactcagatgaagaagctggagatcaaactt
agacactttgaagagctggagaccatcatggaccgagagagggaggcgttggagtaccag
aggcagcagctgctggcagaccgtcagtcgttccacatggagcagctgaaatatgcagag
atgagggcgcgtcagcagcacttccaacagatccagcagcacagccagactggaggccca
cactccgccccggcccccactggccccccacccccaccccagggcccctcagccacccag
tcccagccaaccctcagtacccctgcaccacagccagctcccagcccagcaccccctacc
acctccatcccttcttctgcccagcctgctgaggcccagccgccccccagtggtcctcac
acctcacctccccgcccgccaggccagccccccacggcccactccagcaccaccccaaca
ctccacgagcctagtgcccctctacctgaggatacacaccactcctcagccccagttccc
cctccacagtga
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integrated database retrieval system
