Oncorhynchus tshawytscha (Chinook salmon): 112217713
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Entry
112217713 CDS
T05605
Name
(RefSeq) interferon regulatory factor 6
KO
K10154
interferon regulatory factor 6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112217713
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112217713
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
112217713
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112217713
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
ERbeta_N
Motif
Other DBs
NCBI-GeneID:
112217713
NCBI-ProteinID:
XP_024233964
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Position
LG02:complement(32448046..32454357)
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AA seq
486 aa
AA seq
DB search
MAVTPRRVRLKPWLVAQVDSGLYPGLVWIDRDNKRFRVPWKHATRHTPQHEEENTIFKAW
AVETGKFQEGIDDPDPAKWKAQLRCALNKSREFNLVYDGTKEVPMNPLKIYDVCDIPQPL
SNPGSSDSGSWTPNDCDEDEPDTPEPLPPYPTSNGTSPTLMWSPPGSVSPLHPPSCPPSV
EVWPKEEVKPWPKEEPLDVEMQPSPEEMGPPPPLDMPSPSMPDMMFASPEMWISSLPMTD
LEVQFQYRGKEVCPAMTVSNPQGCRLFYGDLGPMVNQEELFGPISLEQLRFPSTEHIAND
KQRVFTNRLLDVMDRGLILEVSGHDIYAVRLCQCKVYWSGPCAPNPNAPNLIERQRKVKL
FCLESFLSGVIAHQRGQSASLPQFDINLCFGEEWPDSRPRERKLIMVQIIPVVARMITEM
FSGDCMRSFDSGSVRLQISIPDIKDNIVTHLKQLYRLLQTHQGQEGWPQALPLGAGMSLP
QALHAQ
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaccccacggcgtgttcggctcaagccctggctagtggcccaggtggacagt
gggctctacccaggtctggtgtggatcgatcgagacaacaagcgcttcagggtcccctgg
aaacacgctacgcgccacaccccccagcatgaggaagagaacacaatctttaaggcctgg
gcagtggagacaggaaagttccaggagggtattgatgaccctgaccctgccaagtggaaa
gcccagctccgctgtgccctcaacaagagcagagagttcaaccttgtctacgatggcacc
aaagaagttcccatgaaccccctgaagatctacgatgtctgtgacatcccacagcccctc
agtaacccaggatcctcagactctgggtcctggacgccaaatgactgtgatgaagatgaa
ccagatactccagagccccttcctccttatccaacatccaatggcaccagccccactcta
atgtggtctcctccggggtcagtatcgcccctccacccccccagctgccctccatcagtt
gaagtgtggcccaaagaggaggttaagccgtggccaaaagaggagcctttggatgtggag
atgcagccctcccctgaggagatggggccccctccgccacttgacatgccttccccttcc
atgcctgacatgatgttcgcctccccagagatgtggatcagctccttgcccatgacagac
ctggaggtgcagttccagtaccggggtaaggaggtgtgtccagccatgacagtcagtaat
ccccagggctgcaggctgttttacggggacctgggccccatggtcaaccaggaagagctg
tttggccctatcagcctggagcagctgaggttcccctctaccgagcacatcgccaacgac
aagcagagggtcttcaccaaccgcctgctggacgtcatggaccgaggcctcatcctggag
gtcagtggccatgacatctatgccgtccgcctctgccagtgcaaggtgtactggtcaggc
ccctgtgcacccaaccccaatgcacccaacctcatagagaggcagaggaaggttaagctg
ttctgtctggagtcgtttctcagcggtgtaatagcccatcagaggggccagtcggccagc
cttcctcagttcgatatcaacctgtgctttggagaggagtggcctgacagcagacccagg
gagaggaagctcatcatggtgcagatcatccctgtggtagcacgtatgatcactgagatg
ttctcaggtgactgcatgcgctccttcgacagcggcagcgtgcgcctgcagatctccatc
ccagacatcaaggacaacatcgttacccacctgaagcagctgtaccgcctgctgcagacc
caccagggccaggagggctggcctcaggctctgcccctgggggctggcatgagcctgccc
caggccctgcatgcccagtga
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