Oncorhynchus tshawytscha (Chinook salmon): 112217858
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Entry
112217858 CDS
T05605
Name
(RefSeq) protocadherin-10-like isoform X1
KO
K16499
protocadherin delta 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112217858
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112217858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
112217858
NCBI-ProteinID:
XP_042169084
UniProt:
A0A8C8CFI3
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MILLFPLLLSVLLDGAVCQLRFSLPEEQEHGTVIGNIAEDLGLDITKLSARRFQTVPSSR
NPYLDVNLENGNLYVKEKIDREEICRQTVPCNLHLEVFLENPLELFRVEIEVMDINDNPP
TFPETDITVEITESATPGTRFPVENAFDPDVGTNALSTYAITNNNYFYLDVQTQSDGNKF
AELVLEKPLDREQQAVHRYVLTAVDGGVPQRTGTALLVVKVLDSNDNAPVFDQSVYTVSL
RENSPVGTLVIQLNATDIDEGQNGEIVYSFSNHNPARVKDLFKIDARTGRIEVSGEVDYE
ESSTHQIYVQAKDLGANAVPAHCKVMVKLVDVNDNTPEISFSTVTESVSEQDAPGTVIAL
FSVTDRDSGDNGLVSCEILGDVPFKLKSSFKNYYTIVTDGILDRENADSYTITVVAKDQG
LPSLATSKSIKVHVSDENDNAPRFTQPVYDVYVTENNVPGAFIHAVSAVDPDVGPNALIT
YSILECDIQGMSVDTYVSINQDTGYLYALRSFDYEQLKEFSFMVQAKDSGSPELSSNSTV
NVIIVDQNDNAPSVIAPIGKNGTAKEHLPRTAEPGYLVTRIVAMDADDGENARLSYSILR
GNEMGMFRMDWRTGELRTARRVFTKRDPQGSYDLLIEVRDHGQPPLSSSASVSVILVDSV
IDGRSGDRGGSSSKSKETSLDLTLILIIALGAVSFIFLLAMIVLAVRCQKDKKLDLYTCL
MAGECCLCCSPCCSRQAHGRKQKKLSKSDIMLVQSTNVTTGVGAVGQVPVEESGVSGVGM
GGGFGSHHQNQNSYCYQVCLTPESAKTDLMFLKPCSPSRSTDTDHTNPCGAIVAGYSDQQ
PDILSNGSILSNENKHQRTELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHD
ATNRGHAGTDLFSNCTEECKALGHSDRCWMPAFVAGDGRQGTGGDYRSNLHVPGMDSVPN
TEVPATAASGHHDNNLTLTSDLTTSDRSFSTFGKDGGGCTTLPRSMHHLHHHHHLHQSHQ
LHVQHNSPARATATTTTDTTLERKDYESLRGTLPLPYKPTFCEYEYQTTSLEPYDFGLVH
YPY
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgattttgttattcccgctccttctctcggtcttgctggatggagccgtgtgccagctg
cgcttctctcttccggaggagcaggaacacgggaccgtcattgggaatatcgcggaagat
ttggggttggacatcaccaaactttccgcccgccgcttccagactgtgcccagctcgcgg
aacccttacttggatgtgaacctggagaacgggaatctttatgttaaggagaaaatagac
cgggaggagatatgcaggcagacagtaccgtgcaacctgcacctcgaggtgtttctggag
aacccgctcgagcttttccgcgtggagatcgaggtgatggatatcaacgacaatcccccc
actttccctgagacagacatcactgtggagataacggaaagtgccaccccaggtacccgg
ttcccggtggagaatgctttcgacccagacgtcgggaccaacgcgctcagcacctacgcc
ataacgaacaataactatttttacctggatgttcagacacagagcgacgggaacaagttt
gcggagttagtgctggaaaaaccgctagaccgggagcagcaggcggtgcatcggtacgtg
ctcacggcagtagacggaggcgtgccacaacggacgggcaccgcgctcctggtcgttaaa
gtcctggattccaacgataacgcacccgtcttcgaccagtcggtgtacactgtgagccta
cgggagaattcaccagtgggcactctggttattcagctgaacgccactgatatagatgaa
gggcagaacggagagatagtgtattcattcagtaaccacaacccggcgcgggtaaaggat
ctttttaaaatcgatgccaggacggggagaatagaggtgtctggggaagtggactatgag
gagagtagtacacaccaaatatatgtccaggctaaagacctgggagcaaacgccgtgccc
gcgcactgcaaagtcatggtcaaactggtcgacgttaacgacaacacaccggagatcagt
ttcagcacggtgaccgagtctgtgagcgagcaggacgccccaggcacagtcatagctctc
ttcagcgtcaccgaccgggactcgggcgacaacgggctggtaagctgcgagattttgggt
gacgttcctttcaaactcaaatcttcatttaaaaactactacaccatagtaacggatgga
atattagacagagaaaacgcagactcgtacacaatcaccgttgtagccaaagaccagggg
ctcccctccctcgccacgagcaaatccatcaaggtacatgtttccgacgagaacgataat
gcaccccgcttcacgcagccagtttacgatgtgtatgtgacggagaataatgtaccaggt
gcttttattcacgcggtgagcgccgtggaccctgacgttggtccgaacgccctcattacc
tactccatattggagtgtgacatccagggcatgtccgtcgacacctatgtgtcaatcaac
caggacactggttacctttatgcactgcgttcattcgactatgaacagttgaaagagttt
agctttatggtgcaggccaaagactccgggagcccagagctctcctccaacagcaccgtt
aatgtcattattgtggaccagaatgacaacgcgccgtcggtgatagcccctatcggtaag
aacggcaccgccaaagaacacctgccgcgcaccgccgagccgggctacctggtcacgcgt
attgtcgccatggacgcagatgatggcgagaacgcacggctctcctacagcattctgcgt
ggcaacgagatgggcatgttccgcatggactggcggacgggggagctgcgcacagcacgc
cgcgtcttcaccaagcgcgacccacagggctcctacgacctgctgattgaggtgagggac
cacggccaaccgccactctcctcctcggctagcgtgagtgtgatcctggtggatagtgtg
atagatggacggagtggagaccgaggaggatcttcctccaagtccaaagagacctctctg
gatctcaccctcatcctcatcatcgccttgggtgccgtctccttcatcttcctcctggct
atgatcgtgctggctgttcgctgccagaaagacaagaagctggacctgtacacgtgcctc
atggcgggggagtgttgcctgtgctgcagcccgtgttgctcgcgccaggcgcacggcagg
aaacagaagaagctcagcaagtcggacatcatgctggtccagagtaccaacgtcaccacc
ggtgtgggcgctgtgggccaggtgcctgtggaggagtctggtgtcagcggcgtcgggatg
ggaggtgggtttggttcccatcatcagaaccagaactcctactgctaccaggtgtgtctg
acaccggagagcgctaaaacggacctgatgttcctgaaaccatgcagcccctcgcgcagc
accgacacggaccacaccaacccctgtggggccatagtggccgggtacagcgaccagcaa
ccggacatcttatccaacgggagcatcctctccaatgagaacaaacaccagcgaacagag
cttagttaccttgtggacagaccaaggagagtgaacagttctgcgttccaagaagcggac
atcgtgagttctaaagacagcggtcatggggacagcgagcagggagacagtgatcacgat
gccaccaaccggggtcatgccggtacagatctcttctctaactgtacagaggagtgtaag
gccctgggtcactccgaccgctgctggatgccagccttcgtcgctggcgacggtcgccag
ggcaccggtggcgattaccgtagcaacctgcacgtgccaggcatggactccgtgccgaac
actgaggtacccgccaccgccgcgtccggtcaccacgacaacaaccttacgctgacttct
gacctcacgacctctgataggtcattctctacgttcggaaaagatggcggcggatgcacc
acactgccacggtcaatgcaccacctccaccaccaccaccacctccaccagtcacatcag
ctgcatgtccaacacaacagcccagctagagctacagccactactactacagacaccacg
ctagagaggaaagactatgagtccttaaggggtacactaccgctaccgtacaaacccacc
ttctgtgagtatgagtaccagactacgtcactagagccctacgactttggcctggtccac
tatccatattag
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