Oncorhynchus tshawytscha (Chinook salmon): 112217959
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Entry
112217959 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112217959
04148 Efferocytosis
112217959
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112217959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112217959
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112217959
Hops complex
112217959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
Vps39_2
zf-RING_11
zf-C3HC4_2
zf-RING_16
DUF5600
zf-RING_2
zf-RING_UBOX
DUF1664
zf-rbx1
zf-ANAPC11
DUF4446
zf-C3H2C3
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
112217959
NCBI-ProteinID:
XP_024234349
LinkDB
All DBs
Position
LG18:38947880..38983119
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AA seq
986 aa
AA seq
DB search
MSSILDEYEDSQNSRHPVQHSSRLSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDDSRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGRPAPVCCIEVERGPESKVVIIATTRKRLFQFVGRVA
EGSEQQGFSSVFSQNQELLPSFQEFPFNMGYSEITFYTSKLRSCPKAFAWMMGNGVLYGQ
LDYIRPDSVLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDLAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQDEALKEFLLKK
LNNLKQSEKTQITLLVTWLTELYLNHLGLLESAEGKHGVFQETRDEFRKFLSSSKHKECL
YNNRTTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPILMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQQVNETIRYMEFCVYQL
TVTEEAIHNYLLSLYAKYKPDSLLLYLEQAGTHASYIHYDLKYTLRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELKQEMEEATESAKRIRED
IQEMRNKYGVVENQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFLEVTPHLSTYKQTKLG
ELQKKLAAATQTSKSRHRPAPKEKEEGGDTASLGKESAGVSREQIKSDIDDIIAFECVYC
GELMIKSIDKPFIDPQKLEEEKSSWL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaagactcgcagaacagcaggcaccctgtgcaacat
agtagccgcctgtctgctgctaacatcggcataacgcattcagggtttgtgaatgtgaga
ctcgaagaggagaagccgatattcaacaaacagaggattgatttctcacccccagagaag
atcaaccactttgctgtctgtaacaatcagctatgcatgagtttagggaaggacactctc
ctgaggattgaccttgccaagccagaccagcccaaccagatagaactggggaggaaggat
gacagcagagtacacaagctcttcctggatcccacagggtcccacctggtgatttctctc
agcaccagcgagtgtctgtatctgaacaggaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtgtaggctggaacaagcttctggggaccgagaccaac
actgggcccatcctagtgggaaccagccagggaatcatcttcgaggctgagatctctgct
tcagagggaagcctgtttaacaccaaccctgaccagtacttcaaacaggtccactccctg
gaggaggacgggaggcctgctcctgtgtgctgtatagaggtggagagaggtccggagtct
aaagtcgtcatcatcgccaccaccaggaagcgtctgttccagttcgtaggtcgtgtggcg
gaggggtccgagcagcaaggcttcagctccgtcttctcacagaaccaggagctgctgccc
agcttccaggagtttccgtttaacatgggctacagtgagatcaccttctacacctccaag
ctcaggtcctgccccaaggccttcgcatggatgatgggtaatggagttctctacggtcag
ctggactacatcaggccggactcggtgctcagtgatgtgcaggtgtgggattacacccca
gacatagacttcagtttcaacaagcccatctccatcgtgttgactcagttccactttcta
ctcctcctccctgaccgcgtcaaggccatctgcaccctcaacggacaggtggtgtacgag
gatgtgtttcctgataagttcggcactctgaagaagatgatcaaagacctagcaggaggc
ctggtgtggatctatactgagaaggctgtcttcagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagcatgaacaagtttgacctggctaaggagtactgccgg
gaccggccagagtgcatggacatggtcctggctaaagaggcagaacactgcttccagaac
aaacgctacttggagagcgctaaatgctacgctctgacccagaactacttcgaagagatt
gctttgaagtttatcgaggcaaaacaggacgaggctctgaaagagttcctgctgaagaaa
ctcaataatttaaaacagagtgagaagacccagatcaccctactggtcacttggctgact
gagctttacctgaaccacctggggcttctagaatctgccgaggggaaacatggggtgttc
caggagacgcgtgatgagttccggaagttcctcagtagctccaaacacaaggagtgtctc
tataacaaccgaacgaccatctatgacctgctggctagccacggcaacgtggacgacatg
gtctacttctctgtcatcatgcaggactatgagagggtgatctctcatcactgtcagcat
gatgactatagcgccgccctggaggtgctctctaagcactgcgacgagaagctcttctat
aagttctcccccatcctcatgcaacacatacctaagaaggtggtggacgcctggatccag
atgggttccaggctggaacctaagaaactgatcccagccctggtcaactacagtcagatg
ggttcaacacaacaggtcaacgagaccatccggtacatggagttctgtgtctaccagctc
actgtgaccgaagaggccatacacaactacctgctgtccctctacgccaagtacaaacct
gatagtctcttgttgtacctggaacaggctggtacccacgcgtcatacatccactatgac
ttaaagtacaccctgaggctgtgtgctgaacatggttacctccaggcctgtgttctggtc
tataagatcatggagctgtatgaggaagctgtcgatctggccctacaagtggatgtggac
ctggccaagtcatgtgctgacctgcctgaggatgacgaggagttgaggaagaagttgtgg
ctgaagatcgctcgtcacgtggtgcaagaggagaaggatgtgaagaaggccatgaactgt
ctgtccagctgtaacctgctcaagatagaagacatactgcccttcttcccggacttcgtc
accatagaccacttcaaggaggctatctgcagctctttagaggagtacaaccagcatata
gacgagctgaagcaggagatggaggaggcgacggagagcgccaagcggatcagagaggac
atccaggagatgaggaacaagtacggggtggtggagaaccaggagaaatgtgctgcctgc
gacttccccctcctcaacagacccttctatctgttcctctgtggtcacatgttccactat
gactgcctcttcctggaggtgacccctcacctgtccacctacaagcagactaaactaggt
gagctgcagaagaagttggctgcagccactcagacctccaagtctcgccaccgccccgcc
cccaaggagaaggaggaggggggcgacaccgccagcctgggcaaagagagtgctggagtc
agccgtgagcaaatcaagtcagacatcgatgacatcatcgcgtttgaatgcgtgtactgc
ggcgagctgatgatcaagtcgatcgacaagccgtttattgatccacagaagttggaggag
gagaagtccagctggctctga
DBGET
integrated database retrieval system
