Oncorhynchus tshawytscha (Chinook salmon): 112218028
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Entry
112218028 CDS
T05605
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112218028
04812 Cytoskeleton proteins [BR:
otw04812
]
112218028
Cilium and associated proteins [BR:
otw03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
112218028
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
112218028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
112218028
NCBI-ProteinID:
XP_042156486
LinkDB
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Position
LG18:complement(42050360..42062432)
Genome browser
AA seq
1964 aa
AA seq
DB search
MDDDIEKRVLVNKDGSLSMEMKVRFRLLNDETLHWSTEIKKSVGTTNEYLQGYHDNCFVQ
QGSVESCSETELLYTGEADDAYITKLHQKHLDVPHCQHCCGHCQDYEIRKTHISGGQRTV
RHVTSSSSSASSHTIVHKKGSVETMSSEEITEYMVEKAACFQQTVEEGGDTTVEYCTISR
GCSRSEMSLTTTSGKCKSRASTQEKSEILGKSESIDITTQASDNDEAMADSSSSAPSKES
QSEVSVKITDAEEDERPVSAVSLSSQILASLREDQDDEDDDLPPSASRACSCSQNSNAEE
EEEEEPTRSVVLNTAATPMQHLSPRPPSSKISSVHSKSVGALSRAPANGQDDQKSNNCKC
EASDVAGDSTDADDGNAKTAVEKETGQEGIPSGITETKHTKPEERAMSSLSVKSNVSTRS
KRSKIGDSGVQEEKGEWSSKPERAPSAMSAKYNMSARHKKYDFSDDPAAEEERAASTMSA
KSAMSNASARSITSKASGFPAEENAEEVEETEVSAPSANISARSRKSTVSEVPAEKKDQT
ERTARAISAKSNVSAKSGKSTFSEASTEETAASKEKTKERAPSAMSAKSNISERSKKPDH
GTEERASSTLSAKSHVSVRSRKSKVSEVAAEEKAAEQVEEHVEKATSAVSAESPRSAGTH
TSAKSHASHRTHASDRTHTSDTCIFCNSRPEDSITAEVTERPKSKMSNVSSHLQVKGQKD
KNNTDDAKSDKGSDISTKTNRSKTAIRDHVDTPRPNSIASEVHLTPTLPHCPPTPRKIKQ
PVILLGFSSDSNKLHTAVPRKESSNILCDGPSEAIDRNVSDNKSDKSGKHRKGVSSRSSS
LQRLEGDVSELVPSNLPNASPTEVVNEWLKKIPSDSAMYDIGDEFSDRGHSPELAPKEKT
NGTEENDVTSVCETQKEKEEKEEPKETAANHTYQTACVADGEEPAETPPETPPETPPETP
PETPPETPPEGTAPQEDVSKSFHSSVQVMKVLLSPKLDRCHSLPEFSPVYGRKLSTSARG
LLDCLAKLQLIDFDPNDDANAKDTRYRELMNILQSLWLCDPAEGGKQQQNGCDQHSVDGD
TKARSSSGVDVSSGSTGSGGLAQAPNAEGEALLRAQEVDKTAEEQESPESSIPMSDPASP
YVASQVQWTTEEGGTAVEKEKQKDEDIPASDDTIRNESVRELPETPPSSNKSSDPREDTT
SGSPPSVQRAQLAKKVSLDPDPVWVLKLLNKLEKQFMTHYVDAMAEFKVRWNLDDSEHLD
AMIAELKDDVHSRIQLSIDRELRKIHDRGGRPRPPKEELSRESGAQTETRRRRLKLNQSI
DYREEKSDDATGTSFSDQRSDDEYCPCETCIKKKLELGPVLPAEVLHIAPVMMAFDLKSI
LQLKKNPTPMTQAVDATDDTETTDETTVVKTSIIHAFDLKSILQLKKDNPPQIQEEVDVT
DETGGVDEAKAAETLVGNVINGAKKEADESQEQEDDEQDDEMADEAEAAVEETAKDEAGE
EEEADIAEDEETVDAETPEDEAVEEEEEAKAETAEAETVEEDAGEEETSEAGTAADDETA
GEEEETAQDETTGEETADDESAGEEESAEAETAEGEEQTARDETGEDETENAGEESAEPV
TADEEETAEAEAAEDEGAEAEAEEDVEKEEAEKEMKIEPEVESNIEETAIRKDNVEETPV
TSFNAFARAEYSEDGAYSDDEDSETERNNEESEAQEDKAEAEAELQVEETTVEEEVEEGE
EEQEEAEEEQAEVEEEAEVEEEAEEEHDVEDTPVEETPVEELKEKGEEEAEVEVEEDQTE
AEEEQEEDEDTAENYAAPEEEPADEVDDVTSKGQSEDDGDGNGPSGTSETSLHSQPTKSS
MESQPGSLDEILDEEAEREYNSEKSSQTGSEIGSGHRLSVKRRQMYLMEKENESRVSEVT
ESASEVLERQVVSPKKKTPKKSPARSVKSSKAKESDIDQDDLDF
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgacattgagaaaagggtgctagtcaacaaagatggcagcttgtcaatggaa
atgaaagtgcgtttccgactactgaacgacgagaccctacattggtccacagaaataaag
aagtcggtaggaacgaccaacgaatacctccaaggataccacgacaactgctttgttcag
caaggtagtgtggaaagctgttcagagacggagctcctttacacaggcgaggctgacgat
gcctacatcaccaaactgcaccagaagcatctggacgtccctcactgtcagcactgctgt
ggccactgccaggactatgagatcaggaagacccatatttcgggggggcagaggactgtc
cgccacgtcacctcctccagctccagtgcctcctcacacaccattgtccataaaaaaggt
tcggtggagaccatgtccagtgaggagatcaccgagtacatggtggagaaggctgcttgc
ttccaacagactgtggaggaagggggcgacaccactgtggagtactgcaccatcagccgc
ggctgcagcaggagcgagatgagcttgactacgacgtccggcaagtgtaagagtagggct
tccacccaggaaaagagcgagatccttggcaagagcgagagcattgacattacaacccag
gcatcggataacgacgaggctatggctgatagttcttcctcagctccttctaaggagtct
cagagcgaggttagcgtcaagatcactgatgcggaggaagacgagcggcctgtgtctgct
gttagtctttcctctcagatcctggcatcgctcagggaagaccaggatgatgaggacgac
gaccttccaccaagtgcttcgagagcatgttcgtgttcccagaatagtaacgccgaagag
gaggaagaggaggagcccaccagaagtgttgttttgaacacagcagcaacaccaatgcaa
catttatctcccaggcctcctagtagtaagatatcttctgtacactctaagtcagttggg
gctctgtctcgggcaccagcaaatggacaagatgaccaaaaatcaaacaactgtaaatgt
gaagcatctgatgtagctggagattctacggacgctgatgacggaaatgctaagactgca
gttgaaaaggaaacaggtcaagaagggatcccttcagggatcactgaaaccaaacacacc
aaaccagaggagagggcaatgagctcactgtctgtcaaatcaaatgtctctaccagatcc
aagaggtccaaaattggggattcaggagttcaggaggagaagggagagtggtcatcaaaa
cctgagagagcacccagtgctatgtctgctaagtacaatatgtcagcaagacacaagaaa
tacgacttttcagatgatcctgctgcagaggaggagcgagcagctagtacgatgtcagct
aagtcagccatgtcaaatgcttcagctagatctataacatctaaagcttctggatttcca
gctgaggaaaatgcagaagaggtagaagaaactgaagtgagtgcaccgagcgctaatatc
tctgcaagatccaggaagtcaacagtgtctgaagtccctgctgaaaaaaaggatcaaacc
gagagaacagctagagctatatctgctaagtccaatgtctctgcaaaatctgggaaatcc
acattttctgaagcttctactgaggaaacagcagcctcaaaagagaaaacgaaggagaga
gcaccgagcgctatgtctgcgaaatcaaatatctcagaaagatctaagaaacctgaccat
ggaacagaggagcgagcatccagtactctatcagctaagtcacatgtatctgtaagatca
aggaagtccaaagtttctgaagttgctgccgaagaaaaggctgcagagcaggtagaggaa
catgtggaaaaagcaacaagtgctgtgtcggctgagtctccaagatcagccggaacccac
acatctgccaagtcccacgcatcacacagaacccatgcatcagacaggacccacacatca
gacacatgtattttttgtaactccagacccgaagatagcataactgctgaagtgactgag
agacctaaaagcaagatgtccaatgtgtcgtcccacctgcaagtgaaaggacaaaaagac
aaaaacaatacggatgacgccaaaagcgacaaagggagtgatatttcaacgaagacaaac
agatcaaagactgccattagagatcatgtagacactcccagacctaactctattgcgtca
gaggttcatctcactcctactctaccacactgccctccaacccctagaaaaattaaacaa
cctgttattctacttggtttttcgagtgacagtaacaagttacacacagctgttcctcgg
aaggagagctctaacatcttatgtgatggtccctcagaagcgatagacaggaatgtcagt
gacaacaaaagtgacaagagcggcaaacacaggaaaggggtttcctctcgcagttcctcc
ctacagcggctggaaggagatgtctctgagctggttccctccaatctaccaaacgcctct
ccaacagaggtggtgaatgagtggcttaagaaaataccatctgacagtgcgatgtacgac
attggggacgaattcagtgacagaggccattcaccggagctggcaccaaaggaaaaaacg
aatgggacggaggagaacgacgtcacctctgtgtgtgagactcaaaaagaaaaggaagaa
aaggaagagcctaaagagacagcagccaaccatacataccagacagcgtgtgtggctgat
ggtgaggagccagcagagaccccacctgagaccccaccagagaccccacctgagacccca
ccagagaccccacctgagaccccaccagagggcaccgctccacaggaggacgtatcaaag
agctttcactcctcagtgcaggtgatgaaagtactgttgagtcccaagcttgaccggtgt
cacagtttacctgaattttcgccagtgtacggacgtaaactgagcacctcagccagaggt
ctcctggattgcctcgcaaagctacagttgatagactttgatcccaacgacgatgcaaat
gccaaggacacaaggtacagagagctaatgaacatcctccagtccctctggttgtgtgac
ccagcagaaggtggaaagcaacagcagaatggctgtgatcaacactctgtggacggtgac
accaaagcacggtcctcctctggggtggacgtcagcagtggctcaacaggctcaggtggt
ttggctcaggcaccgaacgcagagggggaagcattgctgagggcacaagaagttgacaaa
actgcagaggaacaggaaagcccagagtcctcaatccctatgtctgatccagccagcccg
tacgtagccagtcaggtccaatggaccacagaggaaggaggaacagcagtggagaaagag
aaacaaaaagatgaagacatcccagcgtctgatgacaccattagaaatgaaagtgtgaga
gaattaccagaaacacccccgtcttccaacaaaagctcagaccctcgagaggacacaacc
tctggctctcctccatctgtccaaagggcacaactagccaaaaaagtttccctagatcct
gatcctgtctgggtcttgaagttactgaacaaactagagaagcagttcatgacacattat
gtggatgccatggcagagttcaaggttcgctggaatttggatgacagcgaacatctcgat
gccatgatagccgaactgaaagacgatgtgcatagcaggatacaattaagcattgacaga
gaactaaggaagatccacgatcgaggtggaagaccaaggccacccaaagaagaattgtca
cgagaatcaggtgcgcaaactgagacgaggagaagaagactgaagctcaaccagtctatt
gattaccgagaggagaaaagcgacgatgcaaccggcacttctttcagcgaccaacggagt
gatgatgaatattgcccttgtgagacatgtataaaaaagaaactagaattaggaccagtg
cttcctgcagaagttttgcacattgctccagtcatgatggcttttgatctaaagtcaatc
ctccagttgaaaaagaaccctactccaatgacacaagcagttgatgcaaccgacgacact
gaaactacggatgaaaccacagtagtgaaaactagtattatacatgcatttgatttaaag
tcaattctccagttgaaaaaggacaatcctccacagatacaagaagaagtcgatgttaca
gatgagactggaggtgtagatgaagcaaaagcagcggaaactcttgttggaaacgttatc
aacggggctaagaaagaggcggatgaatcacaagaacaggaggatgatgaacaggatgat
gaaatggctgatgaagctgaggcagcagtagaagagacagctaaagatgaagcaggagaa
gaagaggaagctgatattgctgaagatgaagaaactgttgacgcagaaactccagaagat
gaagcagtagaagaagaggaggaagctaaagcagaaacagcagaagctgagacagtagaa
gaggatgcaggagaagaagaaacttctgaagcagggacagcagctgatgacgaaacagca
ggagaagaagaagagacagctcaagatgaaactacaggagaggagacagctgacgacgaa
tcagcaggagaggaagagagtgctgaagctgagacagctgagggagaagagcagacagcc
agagatgaaacaggagaagatgagactgaaaacgcaggagaagagtcggcagaacctgta
acagcagacgaagaagagactgccgaagcagaggcagctgaagatgaaggagctgaagct
gaagctgaggaggatgtagaaaaagaggaagctgaaaaagaaatgaaaatagagccagaa
gttgagtcaaacatcgaggagacagctatcaggaaagacaacgtggaggaaactccagtg
acctcattcaatgcctttgccagagcagaatactctgaagacggtgcttactccgacgat
gaggattcagagactgaacgaaacaatgaggagtcagaggcccaagaggacaaagcagaa
gcagaggctgagcttcaggttgaggagactactgttgaggaggaagtggaggaaggggag
gaggagcaagaagaagctgaggaggagcaggcagaagttgaggaggaggcggaggtggaa
gaggaagctgaagaggagcacgacgttgaggataccccagttgaagagactccagttgag
gagctgaaggagaaaggggaggaggaagctgaagtggaagttgaggaggatcagacagaa
gctgaggaggaacaggaggaagatgaggatacggctgaaaactatgctgctcctgaggaa
gagccagccgatgaggtggatgatgtcacaagcaaaggacagtctgaagacgacggtgat
ggcaatggaccttctgggacatctgagacgagcctacatagccagccaaccaaatcttcc
atggaatcccaaccaggctcgctggacgaaatcctggatgaagaggcagagagagagtac
aacagcgagaagagttcacagacagggtcggagataggctcgggccaccgtctctctgtg
aagagaaggcagatgtacctcatggaaaaagagaacgagagcagagtgtcagaagtcaca
gagtcagccagcgaggttctcgagcgacaagtcgtctccccaaagaagaagactccaaag
aagtctccggcaagatctgtcaagtcaagcaaggccaaagagagtgatattgatcaagac
gatcttgatttctaa
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