Oncorhynchus tshawytscha (Chinook salmon): 112218252
Help
Entry
112218252 CDS
T05605
Name
(RefSeq) transcription factor SOX-13-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112218252
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112218252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112218252
NCBI-ProteinID:
XP_024234669
LinkDB
All DBs
Position
LG02:30584371..30644262
Genome browser
AA seq
661 aa
AA seq
DB search
MTCFSITSALLWRGPLGLGTSTLTAPKRMVEPSPPALHLHASGDVSMVGVSVKLEESGGE
GGGAHTRAEQLSSPACDWSGHQPMEQLESRQLTPPLSRSPSEGSPGKEQLLRQSPVGMKG
GSRGYNHRPDGHMHPTVSEVMPTIEKLLSVDWREKFLDKSPLGGNHLKGTPESLAEKELQ
LLLMINQLGGLREQLLGAHSEQRNMAALLLEKQQQQMELARQQQEQIAKQQQQLIQQQHK
INLLQQQIQQVNMPYVMIPAFHPNTQQLPVTADNQMTMPLQPIPCKPVDYPMQLLQNSHS
TPVKRPSGTFRQEASQPLNLTSKPKGMDMGKSPSPQIFELGSLTLQGGYRPRDNHRDSPS
RPALNLGFLGEGDVVTQAIHDAQQLLWSHGPGGRERERERDCTARMEHKESGRSDRLPHQ
DRGENRQTRQTNEDHHSSDSEGPLSAPGVGLFAEVRSPPSSVHIKRPMNAFMVWAKDERR
RILQAFPDMHNSSISKILGTRWKSMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPKRT
CIVEGRRLRVGEYKAMMKSRRQEQRGAYTHSQSEPQKLHYAPGEGQYPGGGGTVSMPTVP
FHPALLEHYLPRGLEAPPPRRLDGQITPTPLHRERERPPYSEGEESDRGERSEGELVLLT
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgtttcagcatcaccagtgctctactgtggaggggtcctctgggtctggggacc
tccacactcaccgcaccgaagagaatggtggagcccagtcccccagcgctgcatctccat
gccagcggcgatgtcagcatggtgggcgtcagtgtgaagttggaggagtctggaggagaa
gggggaggagcccacaccagggcagagcagctctcctctcctgcctgtgattggtcagga
catcagccaatggaacaactggagtctagacagctgactcctcccctctcccgctcaccc
tcagagggctctcctggtaaggaacagcttctcagacagagtcctgttgggatgaagggg
ggcagcagggggtacaaccaccgaccagatggacacatgcaccccactgtcagcgaagtc
atgcccaccatagagaagcttctgagtgtggactggagggagaaatttctggacaaaagc
cccctgggaggcaaccacctgaaaggcactccagagtctctggcagagaaggagctgcag
ttgttattgatgatcaaccagctgggtggtctgagggagcagctgctgggagcccactct
gagcagaggaacatggctgccttgctgctggaaaaacaacagcagcagatggagctggcc
agacagcagcaggaacagattgccaaacagcagcagcagttgatccagcagcagcacaaa
atcaacctgcttcagcaacagatccagcaggttaacatgccctacgtgatgatcccagcc
ttccaccccaacacccagcaactccctgtcactgccgacaaccagatgaccatgcctctg
cagccaatcccctgcaagccagtggactatcccatgcagctgctgcagaactctcactcc
acccctgtgaaaaggcccagtggtaccttccgtcaggaagccagtcagcctctgaatctg
acctccaagcccaaggggatggacatggggaagagccccagcccgcagatctttgagctg
ggctcgctgactcttcagggtgggtacagacccagggacaaccatagagatagcccttca
cgtcctgcacttaacctaggtttcctgggagagggggatgtggtgacccaggccatccac
gatgcccagcagctgctgtggagtcatgggccgggcggaagagagagggagcgagagaga
gactgcactgccaggatggagcataaggagtctggtcgcagcgacaggctgccacaccaa
gaccggggagagaacagacaaacccgccaaaccaacgaggaccaccacagcagtgactct
gagggccccctgtctgctcctggtgtggggttgtttgcagaggttcgcagtcccccctcc
tccgtccacatcaagaggcccatgaacgccttcatggtctgggccaaagacgagaggcga
cgtatactacaggccttccctgacatgcacaactcctccatcagcaagatactgggaact
agatggaagtctatgtctaaccaggagaagcagccctactatgaggagcaggccaggctg
agccgacagcacctggagcgttaccccgactacaaatacaagccccgccccaaacgcacc
tgcatcgtggaggggcggagactcagggtgggcgagtacaaagccatgatgaagagcagg
agacaggagcagagaggggcatacacacacagtcaatcagagccgcagaagctgcactac
gccccaggcgagggccaatacccaggcggcggtggaacggtctccatgccgacggtgcca
ttccaccccgcactattggagcactacctgccacgagggttggaggctccgcctcctcgc
agacttgacgggcagatcacacccactcccctccacagagagagggagagaccaccgtac
agcgagggggaggagagtgacagaggagagaggagtgagggagagctagttctcctcact
gactga
DBGET
integrated database retrieval system
