Oncorhynchus tshawytscha (Chinook salmon): 112218311
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Entry
112218311 CDS
T05605
Symbol
snx1a
Name
(RefSeq) sorting nexin-1a isoform X1
KO
K17917
sorting nexin-1/2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112218311 (snx1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112218311 (snx1a)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112218311 (snx1a)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Macropinocytosis
Sorting nexins
112218311 (snx1a)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
112218311 (snx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps5
PX
Sorting_nexin
BAR_3_WASP_bdg
DUF6269
Phage_T7_Gp13
Motif
Other DBs
NCBI-GeneID:
112218311
NCBI-ProteinID:
XP_024234760
LinkDB
All DBs
Position
LG19:complement(7792462..7807645)
Genome browser
AA seq
771 aa
AA seq
DB search
MKMATSSERSPPPFPEDLEPEPDEVGDQDSDDGEDIFLGTDNPLEIKMDPSLSASDIASS
TKPLSEASSPPVMDLLSEPASEASSAPMVDLLMEPASEGSSAPMVDILSEPASEASSAPM
VDLLMEPAREGSSAPMVDLLMEPASEASSAPMLDLFMEPASEASSGPMMNLLMEPASDDL
KEPPKPDIDPLADILNDTPLSEVKTPVAAMPQETPSDLFDDEPSELFAEPRQSNTAKQQQ
TSIFDEPDEDLFSEPLGEASKKPQNDFFKEALAPVAKASNVCGPLSDNYNEHPTDIFTEE
AMTTLPSAVSTVSVNSKTNGVHSDEEEPDIFAEATVELSLDSPRNDRKKKEAAKPSASAP
APSVSASASKPQPKTLEEVQYITLEEEVEDKFELNISITNPEKVGDGMNAYMAYKVSTQT
TLPMFRSKTFTVRRRFSDFLGLYEKLSDKHTPNGYIVPPPPEKSIMGMTKVKVGKEDNSS
AEFVERRRAALERYLQRVVFHPSLLQDPDVREFLERDDMPRAHNTQALSGAGFLKMINRA
TDSLSKMTIKMNESDVWFEEKLQEVEAEDQQLRKLHIMVDSLVGHRKELSVNTGGFAKSV
AMLGSSEDNTALSRALSQLAEVEDKMEQLHQEQAASDSFCFAELLADYIRLLGSVRASFD
QRMKTWQRWQDAQNMLQKKRETEAKLLWANKPDKLQQAKDDITEWEAKVTQYERDFDRVS
ATVRKEVLRFEKEKACDFKKQIIKYLESLLQSQQQLIKYWEAFLPEAKAIA
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggcgaccagttcagagcgtagtccccctccctttcccgaggacctggaaccg
gagcctgacgaagttggagaccaagacagtgatgacggagaagacatttttcttggcaca
gataacccattggagataaagatggacccttcgctgtctgcaagtgacatcgcaagttca
accaaaccactgagtgaagcatctagtcctccagtgatggacctccttagtgaaccagca
agtgaggcatctagtgcgccaatggtggacctccttatggaaccagcaagcgagggatct
agtgctccaatggtggacatccttagtgaaccagcaagcgaggcatctagtgcgccaatg
gtggacctccttatggaaccagcaagggagggatctagtgctccaatggtggacctcctt
atggaaccagcaagcgaggcatctagtgctccaatgctggacctctttatggaaccagca
agcgaggcatctagtggtccaatgatgaatctccttatggaaccagcaagtgacgactta
aaggagcctcccaaacctgacatcgacccattggctgacattctcaacgacactccactc
agtgaagtcaaaacaccggttgctgcgatgccccaggagacaccgagcgacctctttgac
gatgagcctagcgaacttttcgctgaaccacgacaaagtaacaccgccaagcaacaacaa
actagcatctttgacgaacctgatgaggacctcttcagcgaaccactgggtgaggcctcg
aagaaaccccagaatgatttcttcaaagaagcacttgcaccagtggccaaagctagcaat
gtctgcggtcctctgagtgacaactacaatgagcaccccactgatatattcactgaggag
gctatgactactctccctagtgcagtcagtactgtttccgtcaactccaagaccaacgga
gtccactccgatgaggaggaacctgatatatttgcagaagccaccgtagagctgtctctg
gacagccctaggaatgacagaaaaaagaaagaggcagccaagccctctgcgtctgcccct
gctccctcagtctcagcaagtgcttccaaaccgcaacccaagaccctggaggaggtacag
tacattacattggaagaggaggttgaggataaatttgaactgaatatctcaataaccaat
ccagagaaagttggggatggcatgaacgcttacatggcctacaaagtctccacacagacc
acgctgcccatgttccgcagtaagacgttcacagtgcgccggcgtttcagtgacttctta
ggcctttacgagaagctctcagataaacacacaccgaacggctacattgtgcccccgccg
cctgagaagagcattatgggcatgactaaagtcaaagtgggaaaagaggacaactcgtcg
gctgagtttgtggagaggaggagggcggctctggagaggtatctgcagagagtggtgttc
cacccatcactgctacaagaccctgatgtcagagaattcttggagagagacgatatgccc
agggctcacaacacccaggctctgagcggtgccggcttcctgaagatgatcaacagggct
acagactccctcagcaagatgaccatcaaaatgaatgagtcggacgtgtggttcgaggag
aaactgcaggaagtggaggctgaggaccagcagctgaggaagctccacataatggtggac
tctctggttggacacaggaaagagttgtcggtaaacacgggtggctttgccaagagtgtg
gcgatgctgggcagctcggaggacaacacggccctgtccagagccctctcccagctggcc
gaggtggaggacaagatggagcagctgcaccaagagcaggcagccagcgactcgttctgc
ttcgccgagctgctcgccgactacatccgcctgctgggatctgtccgggcctcctttgac
cagcggatgaagacgtggcagcgctggcaggatgctcagaacatgctgcagaaaaagagg
gagacagaggccaagctgctgtgggccaacaaacctgacaagctgcagcaggccaaggat
gacatcactgagtgggaggccaaggtgactcagtatgagagagactttgacagagtgtca
gctacagttcgcaaggaggtgctcaggtttgagaaagagaaggcctgcgatttcaagaaa
cagatcatcaaatacctggagtctctgctacagtcgcagcaacagctgataaagtactgg
gaggcattcttgccagaggcaaaagcaattgcgtga
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