Oncorhynchus tshawytscha (Chinook salmon): 112218343
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Entry
112218343 CDS
T05605
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112218343 (lingo1a)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
112218343 (lingo1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRR_9
LRRNT
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
112218343
NCBI-ProteinID:
XP_024234820
LinkDB
All DBs
Position
LG19:9765060..9816248
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AA seq
615 aa
AA seq
DB search
MGAREASGHSYLVACWQPILILMLGTVLSGSTTGCPSRCECNAQERSVICHRKKLMSVPE
GIPTETRLLDLSKNRIKTINMDEFATYPNLEELELNENTISAIEPGAFNNLYGLRTLGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSMEVGDNDLVFISHRAF
HGLSSLEQLTLEKCNLTSVPTEAFTHLHSLIFLRLRHLNIYVIKDYSFKRLYRLKVLEIA
NWPYLDTMTSNCLYGLNLTSLTITNGNLTSIPYVALRHLVYLRFLNLSYNPIHTIEGNKL
HDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKIFNVSGNALSTLEESAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLQPNYFTCRKSRIR
DRKAQQKFVDEGTTVHFVCQADGDPAPVIMWLSPQKQFITTKTIGRLTVFPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTSLAHLHVHSYSPDWPHQPNKTFAFISNQPNENGGNGTRTN
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGATKHNIEIEYVPRKSDAGMS
SSNADAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgggggccagggaagcgagtgggcacagctacctggtggcttgctggcagcccattctg
attctgatgctgggcaccgtactgtccggttccaccacaggttgcccgtcccgctgcgag
tgcaatgcccaggagcgctcagtcatatgccaccgcaagaagcttatgtccgtccctgag
ggcatccccacagaaacgcggttgctggacctcagcaagaaccgcatcaagaccatcaac
atggacgagttcgcaacctaccccaacctggaggagctggagctcaacgaaaacaccatc
tccgctattgagcccggcgccttcaacaacctgtacggtctccggacattggggctgcgc
agcaacaagctcaaactcatccagctgggtgtgttcacgggcctcagcaacctcacccag
ttggacatcagtgagaacaagatagtcatcctgctggactatatgttccaagacctgtac
aacctgcgctcaatggaggtgggtgacaatgacttggtattcatctcccaccgggccttc
catggtctcagcagcctggagcagctgactttggagaagtgcaacctgacctcggtgccc
accgaggccttcacccaccttcacagtttgatctttctcaggctgcgccacctcaacatc
tatgttattaaggattactccttcaaaagactgtaccggctgaaagtgctagagatcgcc
aactggccctacctggacaccatgacctccaattgtctctatggactgaacctcacctcg
ctgaccatcaccaatggcaacctgacctccatcccatacgtggctctccggcacttggtc
tacctacggtttctgaatctgtcctataaccccatccacaccattgaggggaataagctc
catgaccttctgaggctccaggagtttcacctggttgggggcaggctggctatgatcgag
ccctactcgttccggggcctaaactatctgaagatcttcaatgtgtctggcaatgccttg
agcaccttggaggagtctgcgttccactcggtagggaatctggagactctggcactttac
gataaccccttggcatgtgactgccggctgctgtgggtgttccggagacgctggaggctc
aacttcaaccggcagcaacccacctgcgcttcacctgagttcgtacagggaaaagagttt
aaagatttcccggatgtcctgcagcccaactacttcacgtgtcgcaagtccaggatccgg
gaccgcaaggcgcagcagaaatttgtggacgagggaactactgttcattttgtatgccag
gcggacggtgatcccgccccagtcatcatgtggctctcaccccagaagcagttcatcacg
accaaaaccatcggacggctcacagtattcccagatggcacccttgaggtgcgctacgcg
cagattcaggataatggaacgtatgtgtgtatagccagcaacgccggtggcaatgacaca
tctctcgcccacctgcacgtccatagctactctccagactggcctcaccaacccaacaag
acctttgcattcatctccaaccagcccaatgagaatggtggcaatgggacgcgaaccaac
gtcccgttccccttcgacatcaagaccttaatcatcgccaccactatgggtttcatatct
ttccttggtgtcgtcctgttttgtctggtgctactctttctgtggagtagaggtaaaggg
gccacaaagcacaacatagagattgagtatgtgccacgcaagtcagacgctgggatgagc
agcagcaacgcagacgcccctcgcaagtttaacatgaaaatgatttaa
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