KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112218362
Entry
112218362         CDS       T05605                                 
Name
(RefSeq) la-related protein 1-like isoform X1
  KO
K18757  la-related protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112218362
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112218362
SSDB
Motif
Pfam: LARP1_HEAT La SGP
Other DBs
NCBI-GeneID: 112218362
NCBI-ProteinID: XP_042157286
UniProt: A0AAZ3RUB5
LinkDB
Position
LG19:10975861..11080642
AA seq 1111 aa
MATQVEALLPNNPRIKPEEKGHASKMIQHGEDCPEKGVKQTCVADEGSNMKTNNSEQCWI
ATRELRSKQAKEESNNQEKNTLDQEMHTTDQTEDCVKYSKNEFAEAPPPKVNPWTKKKNA
VTVVSQNGQSHHEPPPTTGPAKVVKAPNPRPRRERVGDFGDAMKWPTPGEIATKETQIEV
VNRTVSCPMPVRQVREVGSTRRSPVPKKPVVKKELKEKRDTNEEGKENQNAKSDDSGEEK
NGDEDSQKNSDEDSQKNGQKKKGNKHRWVPLMMEVKSEGPRERSASRNNTRQNEVPRMPP
NRKNDLRDWYREKSEREWSDDHDEVSSMRSEGAPFRAGFRGRGRGRGRGRGSRGHPDYHY
DYKAYNGKDGAYGQKFGAPVTYYYDNMSSSDLYTVDQGLLKDYVKRQIEYYFSLGNLERD
FFLRKKMDQEGFLSLGLIASFHRVQALTTDVSLIIESLKDSKEVEIIDMKIRRKVEPEKW
PLPGQSMGPDHNQVDLTQLIHCPEFVPRQMPTKQTESAPGSPRSSTPTRGMTRASMQPKM
EQDVSNLKSMPKGLSASLPDLDSESWIEVKKRPKPSPARTKTPSLQQKEDALSPVPKAGL
SLIPSTASAKDEPEELDFMFDEEMEQMDGRRNTFTDWSDEDSDCEIADNDVNKILIVTQT
PPYLRKHPGGDRTGHHTSRSKLTNELVKVINDGLYYYEADLWDDNYEPEYATIKQEVENF
KKVHLISREEFDCLTPEPPVDPNQEVPPGPPKPQQIPVDALANKLFGAPEPSTIARSLPT
TVPDSPNYRSARTPRTPRTPHRKDPAMTPRFYPVVKESRPVDAKTPRKRKTRHSSNPPME
CHVGWVMDSREHRSRTASVSSNASPSEGTPVLGGIGCTPQSLPNFQHPSHELLKENGFTQ
HVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNRKMYEEFKQLVVEDGKEGY
RYGLECLFRYYSYGLERKFRPNIFKDFQEETMKDYEAGQLYGLEKFWAFLKYSKNKNMGI
DPKLQECLSKFKRLEDFRIDPPMEEGGRKRHSSSGDCRRRHPSQGSSRPHSQTGFGPVRP
GPHQGGCQNQQPEPAPAAHTSATASDAQPPK
NT seq 3336 nt   +upstreamnt  +downstreamnt
atggctactcaggtagaggctctcctacccaacaatcctcgtattaaaccagaggagaaa
gggcatgcgagcaagatgatacagcatggagaggactgtcctgaaaagggggtgaagcag
acatgtgttgccgacgagggtagcaatatgaaaacaaacaactcagaacagtgttggatt
gccacgagggagctacgctctaaacaggcaaaagaagagagtaacaatcaagagaaaaac
accctggatcaagagatgcacacgactgatcaaacggaagactgtgtgaaatacagtaaa
aatgagtttgctgaagcacccccgcccaaggttaacccatggaccaagaaaaagaatgcg
gtgaccgtggtcagccagaatggacaatcacatcatgagccgccaccaacaacaggcccg
gccaaggtggtgaaggccccaaacccccggcctcggagagaaagggttggagattttggt
gatgctatgaagtggccaacccccggggagattgcaactaaagaaacgcagattgaggtt
gtgaatcggactgtgtcatgccccatgcccgtcaggcaggtcagagaagtgggctccaca
cggagatccccagtccccaagaagcctgtggtgaagaaagagttgaaggagaagcgtgac
accaacgaggagggcaaggagaaccagaatgcgaagtcagacgattctggagaggagaag
aacggcgacgaggactctcagaagaacagcgacgaggactctcagaagaacggacagaag
aagaaaggaaacaagcataggtgggtgccgctgatgatggaggtgaagtctgaggggccc
agagaacgctcggcctcaaggaacaacacccgtcagaacgaggtgcccaggatgcccccc
aacaggaagaacgacctccgagactggtacagagagaagtccgagcgtgaatggagtgac
gaccatgatgaggtgtccagcatgaggagcgagggtgctcccttccgtgccgggttccgg
ggtcgtggcaggggccggggacgaggcagaggctccagaggtcaccctgactaccattat
gactacaaggcctacaacgggaaggacggtgcctacggacagaagtttggtgctccagtg
acctattactacgacaacatgagcagcagtgacctgtacacagtggaccagggcctgctc
aaggactatgtcaaaaggcagattgagtactacttcagccttggcaacctggagcgggat
ttcttcctgcgcaagaagatggaccaggagggcttcctgtcacttggcctgattgccagc
ttccacagggtgcaggccctcaccactgatgtcagcctcattatagagtctttgaaggac
agcaaagaggtggaaatcattgacatgaagatccgtcggaaggtggagccggagaagtgg
ccacttcctggccagtccatgggaccggaccacaaccaggtggacctgacccagctcatc
cactgccccgagttcgtgccccggcagatgcccactaagcagacagagtctgctccaggg
tctccccggtcctccacgcccaccaggggaatgaccagggcctccatgcagcccaagatg
gagcaggacgtgtccaacctgaagagcatgcccaagggactgtcggccagcctgcccgac
ctggactctgagtcctggatcgaggtgaagaagagacccaagccctccccggccagaacc
aagaccccttcgttgcagcagaaggaagacgctctctccccggtgcccaaggcaggcctc
agcctcatcccctccaccgcctcagccaaggatgagcccgaggagctggacttcatgttt
gatgaggagatggagcagatggatggccgcaggaatacatttaccgactggtccgatgag
gactcggactgcgagatcgccgacaatgacgtcaacaagatcctcattgtgacacagacg
ccgccctacctgcgcaagcacccagggggtgaccgcacgggccaccacacgtcgcgctcc
aagctgaccaatgagctggtgaaggtgatcaacgacggcctgtactactacgaagcagat
ctgtgggatgacaactacgaacccgagtacgccaccatcaagcaagaggtggagaacttc
aaaaaggttcacctgatcagccgagaggagtttgactgcctgaccccagaaccccccgtc
gaccccaaccaggaggtgccccctggacccccaaagccccagcagattcccgtagacgcc
ttggcgaacaaactgttcggtgcccctgagccttccacaatagcacgctccctcccgact
actgtacctgactcgcccaactaccgcagtgcccggacaccccgcacgcctcgcaccccg
caccggaaggaccccgccatgacgccccgtttctaccctgttgtgaaggagagccggccc
gtcgacgccaagaccccaaggaaaaggaagaccaggcacagctctaacccccccatggag
tgccacgttggctgggtgatggactcgcgggagcaccgatctcgcactgcctccgtcagc
tccaacgccagcccctcagagggtacacctgtattggggggaattggctgcaccccccag
tcgctccccaacttccagcacccctcccacgagctgctcaaggagaacggcttcacgcaa
cacgtttatcacaagtaccgtcgacgctgcctaaacgaacgcaagcggttgggcatcggc
caatcccaggagatgaacacgctgttccgtttctggtcgttcttcctgagggatcacttc
aacaggaagatgtatgaggagttcaagcagctggtggtggaggatggcaaggagggatac
aggtacggtttggagtgcctgttcaggtactacagctacggactggaaaggaaattcagg
ccaaacattttcaaggacttccaggaggagaccatgaaagattacgaagctggccagctg
tatggacttgagaagttttgggcatttcttaaatactccaaaaacaagaacatggggatc
gaccccaagttgcaggagtgcttgagcaagtttaagcgtctcgaggatttcagaatcgat
cccccgatggaggagggaggtcgcaagagacactcatccagcggagactgtcgccgccgc
cacccctcccagggctccagccgcccccacagccaaactggcttcggccccgttcgccca
gggccccaccagggaggatgccaaaatcagcagccagagccagcgcccgcagcccatacc
tcggcaaccgcatcagacgcccagccaccaaagtaa

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