Oncorhynchus tshawytscha (Chinook salmon): 112218458
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Entry
112218458 CDS
T05605
Name
(RefSeq) rho guanine nucleotide exchange factor 10-like protein isoform X1
KO
K16727
Rho guanine nucleotide exchange factor 10
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112218458
03036 Chromosome and associated proteins [BR:
otw03036
]
112218458
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112218458
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
112218458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_2
PH_19
RhoGEF
Beta-prop_LRRK2
IQ_SEC7_PH
Beta-prop_RSE1_2nd
SOS1_NGEF_PH
DUF7675
RHG20_PH
Motif
Other DBs
NCBI-GeneID:
112218458
NCBI-ProteinID:
XP_042151953
UniProt:
A0A8C8H2U3
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Position
LG02:complement(27922106..28027391)
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AA seq
1301 aa
AA seq
DB search
MSTVNYQQQQREEEEEEDEEQGEKFEFDDSADEKDPVEAMQTANESSMEATSQPQDNAVT
TPLAHSQQHLNAMPPAGQEDNPSQGQDSTASSDVPVSNPPRRVSGPVELVEPIAAAPSVG
EQPREESQERSGPGDMLPVENQTDSEDHSVETEKKSSSLREHSEGEGVDDDEADAALQTG
SPEVIYDDVPCEGPLSPDEGDMLYEDVHREEMPQGAGNGWSSSEFESYDEQSDTESKLPT
RSKQYSPDVRRLRERCARTKREIAMRLGGKNNYDTKVHQLMKAARSGTKDGLDKTKIAFM
RRVSFLHKKDHSEDVEDDAGYLDVAVSEVKQPPAQLSPMPEGLSSQQVVRRHILGSIIQS
ERSYLESLRRILQEYQRPLLEADPRILSPRKIRPIFHRLREITQCHSMFQIALASRVAEW
DSSEKIGDLFVASFSKSMVLDVYSDYVNNFTNAMALIKKACMSKPAFLEFLKKKQASSID
RITLYGLMVKPIQRFPQFILLLQDMLKNTPKGHVDRLPVQLALTELEMLAEKLNEQKRVA
DQIAETQQLARSVSDRLLCKQLNSDQGSLVLCETLIETVYGERGQILKSKERKVFLFNDI
LICANINIKGPPDISSLVPVGPKYTMKWSAPLLQVQVVEVGQEASQAKDTLFQHGGAKHP
GSACPPGKVILGPPRLYQELQELQHDLSVVEEISLLVGTLQGTYQNLNTTVAQDWCLALQ
RLIRIKEDQIQSANKCRLRLQVPGRPDKSGRPVSFMVVFNTPSPLSKISWVNRLHLAKVA
QREENTPGWFCAEDEGKTMAPFWPLLTCRVPVFATKSSDRKLEAALHNPVQCALLGFSAA
STSLPQGYLWVASGGDATQGQVEIFSLNRPTPRPVKSLQVGAPVRCLEYVPEPSTPEEME
AVALRSPTGVGNTICLGLDDGSILVYGSVDTAAQCLLTLCNPQRCPVLCLKHSINFLFAG
LRDGTMMVYGRSNGGELWEPDTCRTVSVGPEPVRTLLVLEDSVWASCANSVTVIKSSSLS
TQRFEVHPEPMVSVAHMVRAGGGVWMAFSEGSSIRLFHTETLEHLQEINISTRVSLHNPG
QKSMRVTSLLLCQGLLWVGTAQGVIITLPVPKLEGIPKITGKGMTSLNAHCGPVDFLVAT
SSTLSAELLKRDSVGDGPDSACGGEDRSDSSSQESLQQSGCSQGEGRGKARGVLLQYRLR
STSGLPGRALTARGDEASDSSLESLEQRLEDGSIYELSDDPEMWVRGRPCERDRGRRDRV
TSAAVISGGRGFQRLREGTAERTGVESSETTLMVWQLPLTV
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtccactgtgaattatcagcagcaacagagggaggaagaggaggaggaagatgaagag
caaggagagaagtttgagtttgatgacagtgctgatgagaaagacccagtggaagccatg
caaacggcaaacgagtcatctatggaggccacaagccaaccacaggacaatgcagtaaca
acaccccttgcacactcacaacagcacctcaatgcaatgccccctgctggtcaggaggac
aatccttcacagggacaagactccacggcctcttcagatgttccagttagcaacccaccc
aggcgggtctctggcccggtcgagctggttgagcccatcgctgcagcaccttcagtggga
gagcagccccgggaggagtcccaggaaaggtctggtcctggagacatgttaccagtggag
aaccaaactgactcggaggaccatagcgtggagactgagaagaagagctccagcttgaga
gaacactctgaaggtgagggggtggatgatgatgaggccgatgcagcactacagacaggg
agcccggaggtgatctatgatgacgtgccctgtgagggaccactctcccctgacgaaggg
gacatgctctacgaggatgtgcacagagaagaaatgccccagggtgcaggcaatggttgg
agctccagtgagtttgaaagttacgacgagcagtctgataccgagagcaagctaccaacc
cgcagcaagcagtactcccctgacgtgcgtcggctgagggagcgttgtgccaggaccaaa
cgtgaaatagccatgaggctaggtgggaaaaacaactatgacaccaaggttcatcagcta
atgaaggccgctagaagtgggaccaaggatggattggacaagaccaaaatagccttcatg
cggagagtctccttcctgcacaagaaggaccactcagaggatgtggaggatgatgcaggg
tacctggatgtggctgtgtcggaggtgaaacagcctcctgcacagctgagccccatgcct
gaggggctgagcagccagcaggtggtcagacgccacatcctgggttccatcattcagagt
gagcgcagttatcttgagtccctcaggagaatccttcaggagtaccagaggcccttgcta
gaggcggacccacgcatcctgagcccacggaagatccggcccatatttcaccgtctacgg
gagatcactcagtgtcactccatgttccagatcgcactggcatcacgtgtggctgagtgg
gacagcagtgagaagattggggacctatttgtggcctcgttttccaagtccatggtgcta
gatgtttacagcgactatgtcaataacttcaccaatgccatggccctcataaaaaaggca
tgcatgtccaaaccagctttcctggaattcttaaagaagaagcaggcgtccagtattgat
cggatcaccctgtacggcctcatggtgaagcccatccaacgctttccccagttcatccta
ttactgcaggacatgctgaagaacacacctaagggtcacgtagaccgcctgcctgtgcag
ctggctctgactgaactggagatgctggccgagaagctgaatgaacagaaacgtgtggcc
gaccaaatagctgagactcagcagctagcacgcagtgtcagcgaccgcttgctctgcaag
caactgaactcagaccaggggtcactggtgctttgtgagacgttgattgagacggtgtac
ggggagcgtggccagatcctgaagtctaaggagcgcaaagtcttcctcttcaacgacata
ctcatctgtgccaacatcaacatcaaggggccccctgatatcagcagcctggtccctgtt
gggccaaagtacacaatgaagtggagtgcccccctgctgcaggtccaggtggtggaggtg
ggtcaggaggcctcccaggccaaggataccttgttccagcatggcggtgccaagcaccct
ggcagtgcctgtcccccagggaaggtgatcctgggtcctcctcggctctaccaggagctc
caggagctgcagcacgacctgtctgtggtagaggagatctcactactggtgggaacgcta
caggggacataccagaacctgaacacgaccgtggcccaggactggtgtctagctctccag
agactcatccggatcaaggaggatcagattcagagtgccaacaagtgccgcttacgcctg
caggtgcctggaagaccagacaagtcgggacgtcccgtcagcttcatggtggttttcaac
acccccagtcccctcagcaagatctcctgggtcaaccggctgcacctggccaaggtcgca
cagcgagaggagaacacaccaggatggttctgtgcagaagatgaagggaagaccatggca
ccattttggcctttactcacctgccgtgtgcctgtcttcgccaccaaatcctcggacagg
aagcttgaagctgcccttcacaatccggtgcagtgtgctttgttgggcttctctgcagcg
agcacctcgctacctcaaggctatctctgggtggccagtggaggagatgctacccagggg
caggtggagatcttctccctgaacaggcccacaccacgccccgtgaagagcctccaggtg
ggggccccagtgaggtgtctggagtatgtgcctgaacccagcaccccagaggagatggag
gctgtggccctcaggagcccgactggggtggggaacaccatttgtctgggactggatgat
ggaagcatcctggtgtatggcagtgtggacactgcagcccagtgcctgttgaccctgtgt
aaccctcagcgctgtcctgtcctgtgcctcaaacactccatcaacttcctgttcgctggg
ctcagagatggaaccatgatggtgtatggacgaagtaatggtggtgagctgtgggagcca
gacacctgcaggactgtgagtgtgggcccggagcctgtgcgaactcttctggtactggag
gactctgtgtgggccagctgtgccaactctgtgaccgtcatcaagagttccagcctttcc
actcagaggtttgaggtgcacccagaacccatggtgagcgtggcccatatggtgcgggct
ggaggaggagtctggatggcctttagtgagggctcttctattcgcctgttccacactgag
acactggagcatctgcaggaaatcaatatctccacacgagtatctttgcacaacccaggc
cagaagagcatgcgtgtcaccagcctgctcctctgccaggggcttctgtgggtggggact
gcccagggagtcatcatcaccctgcccgtgcccaaactggagggcattcccaaaataaca
ggaaaagggatgacctctctgaatgcccactgtggtccggtggacttcttggtggccacc
tccagcaccctgtccgcagagctgctgaagagggactctgtgggggatggacccgactct
gcctgcggaggggaggaccgcagtgactcctcctcccaggagtctcttcagcagtcaggc
tgctcccagggggaggggcggggcaaggcgcggggtgtgctgctacagtacaggctacgc
tccacgtcggggttgccggggagagcactgacggcacggggcgacgaggcgtctgactcc
tctctggaatctctggaacaaagactggaggacggctccatctatgagctcagtgacgac
cctgagatgtgggtgcgggggcgcccctgtgagcgagatagggggcgtagggacagggtg
acctcggccgcggtcatatccgggggcaggggcttccaaagactgagggaagggacagca
gagcgcacgggtgtggagtcttcagaaacaaccctgatggtatggcaactaccactaact
gtgtga
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