Oncorhynchus tshawytscha (Chinook salmon): 112218509
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Entry
112218509 CDS
T05605
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112218509 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112218509 (sf3b3)
03041 Spliceosome [BR:
otw03041
]
112218509 (sf3b3)
03036 Chromosome and associated proteins [BR:
otw03036
]
112218509 (sf3b3)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112218509 (sf3b3)
Spliceosome [BR:
otw03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112218509 (sf3b3)
Complex B
112218509 (sf3b3)
Complex C
U2 SnRNP specific factors
112218509 (sf3b3)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112218509 (sf3b3)
TFTC complex
112218509 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
112218509
NCBI-ProteinID:
XP_024235118
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All DBs
Position
LG19:complement(24648348..24697302)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATSMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKEDELGVKGTV
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLVNPIQGTTLDLVQLEQNEAAFSVTVCRFASGG
DDWYVLVGVARDMILNPRSVGGGFIYTYRLGGGGDKLEFMHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVTDVQESLFWVRYKRNENQ
LIIFADDTHPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtataacctgaccctgcagcgtgccactggtatcacccacgccatccatgga
aacttctcaggaaccaagatgcaggagatagttgtttccagggggaagataattgagctg
ctgcgtccagatgccaacacagggaaggttcacaccctgcttaccatggaggtgtttggc
atcattcgctccctcatggccttcaggctgacaggaggaactaaagactatattgtggtg
ggcagtgactcaggccgcatcgtgatccttgagtaccacccctccaagaacatgttcgag
aagatccaccaggagacctttggcaagagtggatgtcgtcgcatcgtccctggacagttc
ctcgccgtcgaccccaagggcagagcagtcatgataggtgccattgagaagcagaagctg
gtgtacatcctgaacagagatgcagcagcgcgtctcaccatctcctctcccctggaggct
cacaaggccaacacgctggtctaccatgtggtaggagttgatgtgggctttgaaaacccc
atgtttgcctgtctggagatggactatgaggaagctgacaatgaccccactggcgaggct
gcagccaacacccagcaaaccctgaccttctatgagctggacctgggtctgaaccacgtt
gtgcgcaagtacagcgaggccctggaggagcacggcaacttcctcattacagttcctgga
ggctctgatgggcccagtggggtactcatctgttcagagaattacatcacctacaaaaac
tttggggaccagcctgacattcgctgtcccatcccacgcaggaggaatgacctggatgac
cctgagcgaggcatgatcttcgtctgctcagccacccacaagaccaagtccatgttcttc
ttccttgcccagacagagcagggtgacattttcaaggtcaccctggagaccgatgaggag
atggttacagagatcaggatgaagtacttcgacaccatacctgtagccacatccatgtgc
gtgctgaagaccggcttcttatttgtgtcctcagagtttggtaaccattacctgtaccag
atagcccatctgggagatgatgatgaagagccagagttctcctctgccatgcccctggag
gagggagataccttcttcttccagccacgccccctcaagaacctggtgctggtggacgag
caggagaacctctcccccatcatgtcctgccagattgctgacttggctaatgaggacact
cctcagctatatgtggcctgtggcaggggacccaaatccaccctccgtgtcctcagacat
ggactggaggtatcagagatggctgtgtctgagctgcccggtaaccccaatgctgtgtgg
actgtgcgccgacacattgaagatgagtttgacgcgtacatcattgtttccttcgtcaac
gccaccctggttctgtctatcggtgagaccgtagaggaagtgacagactctggcttcctg
gggaccacccccaccctctcctgctctctgctcggggaggatgctctggtgcaggtgtat
cctgatgggatccgtcacatccgtgctgataagcgtgtgaatgagtggaagactccaggg
aagaagaccattgtgcgctgtgcagtcaaccagaggcaggtggttatcgctctgaccgga
ggagagctggtctactttgagatggacccttctggccagctgaatgagtacacagagagg
aaggagatgtcagctgacgtggtgtgtatgagcttggccaatgtcccccctggcgagcag
cgctcccgtttcctggcggtggggctggtggacaacaccgtccgcatcatctcactggac
ccctcggactgtctccagcccctcagtatgcaggccctgcctgcccagcctgagtctctg
tgtatagtggagatgggaggagtggagaaggaagatgagctaggagtgaagggcactgtc
ggctttctctacctcaacatcggactgcagaatggtgtgttgctcaggaccgtgctggac
ccagtgactggagacctgtctgatactcgtactcggtacttggggtcgcgacctgtgaag
ctcttccgcgtcaggatgcagggacaggaagctgtgttggccatgtcgagtcgctcctgg
ctgagttattcctaccagtcccgattccatctgacgcccctgtcctatgagacgctggaa
tatgcctctggcttcgcctctgaacagtgtccagagggcattgtggcaatctctaccaac
accctgaggattctggccttggagaagctgggtgctgtgttcaaccaggtggccttcccc
ctgcagtacacacctcgcaagtttgtcattcacccagagacaaacaacctgatactcata
gagactgatcacaatgcatacacagaggccaccaaggcccagcgcaagcagcagatggca
gaggagatggttgaggcagctggtgaggatgagagggagctggcagcagagatggctgct
gccttcctcaatgagaacctgccagaagccatctttggggcgcccaaggccgggtctggc
cagtgggcctctctggtgcgtctggtcaaccccatccagggaaccactctggaccttgtc
caactggagcagaatgaggctgccttcagtgtgactgtttgtcggtttgccagcggaggt
gatgactggtatgtgctggtgggggtggcccgggacatgatccttaacccccgctctgtg
ggaggcggttttatctacacctatcggctgggagggggaggggacaaactggagtttatg
cacaagactccagtggaggacgttcctctggcaatcgctccgttccagggccgtgtgctg
gtgggcgttggcaaactgctgcgcatctatgacctgggcaagaagaagctgctccggaag
tgtgagaacaagcatgtgcccaacctggtgactggtatccacaccatcggtcagcgggtc
atagtgactgatgtacaggagagtctgttctgggtgcgctacaagcgtaacgagaatcag
ctgatcatcttcgctgacgacacccaccctcgctgggtcaccactgcctgcctgctggac
tacgacaccatggcttcagccgacaagtttggcaacatcagcattgtgcgccttccccct
aacaccagtgacgatgtggatgaggacccaactgggaacaaagcattgtgggatagaggt
ctgctgaacggagcttctcagaaggctgaagtgatcatgaactaccacattggggagacg
gtgctgtcactgcagaagaccacactgatccccggaggctcggaatctctggtctacaca
actctgtctggaggcatcggcatcctggtgcccttcacttcccacgaggatcatgacttc
ttccagcacttagagatgcatatgcgctcagagttcccccctctgtgtggcagggaccac
ctcagcttccgctcctattacttccctgtaaagaatgtgatagatggagatctgtgtgag
cagttcaactccatggacccccacaagcagaagagtgttgctgaggagctggaccgtact
ccccctgaggtctcaaagaaactggaggacatccgcacacgctatgccttctag
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integrated database retrieval system
