Oncorhynchus tshawytscha (Chinook salmon): 112218535
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Entry
112218535 CDS
T05605
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112218535
03036 Chromosome and associated proteins [BR:
otw03036
]
112218535
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112218535
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112218535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
zf-met
Zf-C2H2_ZNF451
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_15
DUF1442
Motif
Other DBs
NCBI-GeneID:
112218535
NCBI-ProteinID:
XP_024235168
LinkDB
All DBs
Position
LG19:complement(25479321..25494879)
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AA seq
801 aa
AA seq
DB search
MKYSFLVQLLPMDGGPTDVVVEAKDFTYEGEEVVADLLQQAAEGVMDQQPEGVAGLDTQQ
LVEGVNVEMMVMDSLDPALLQLKTEVMDAPVATAHEATVTTVDETQIITLQVVNMDEQQL
GGLRELQLVQVPVSAVPVTQATVEALQSTFVDTTAMPKDGNPVICHTLPLPEGFQVVKVG
ANGEVETVEQDELQHQEEQQVQPEEEEEELHCEPQPEEPQWAKDPDYQPPAKKTIKKAKK
STLRYNTEGDKDNMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQ
CELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQDC
DMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYA
SRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA
RKSDLGVHLRKQHSFIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQE
RHMLMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKAFTRR
NTMARHAENCNGDPSEGENGSPPKRGRGGRKRKMRSRKDEDDDDDDDDDSEDNADPELDD
IDEEDEEAEAALLEEEEEEMMELEQAPPTKPIPAPVEPPVKRKRGRPPKNIPKPSPPAKA
SKAAPKGKAASAAAVIQVEDENTGAIENIIVKKEQEAEQAAPEVVVEQPEEAGVETVELP
VADAAPNGDLTPEMILSMMDR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattcctttctagtgcagttgttaccgatggacggaggaccaacagatgttgtg
gttgaggccaaggacttcacctatgagggggaggaggtggtggcagacctgctccagcaa
gcagcagaaggggtgatggaccagcagccagagggagttgctggtctggatacccagcag
ctggtggagggagtcaatgtggagatgatggtaatggactccctggacccggccctgctg
cagttgaagactgaggtgatggatgcccctgtggctacagcccacgaggccacggtcacc
acggtggatgagacccagatcatcactctgcaggttgtcaatatggatgagcagcagctg
ggaggcctcagggagctacagctggtccaggtccctgtctctgctgtccctgtcacccag
gccactgtagaggcgctacagagcaccttcgtggacaccacggccatgcccaaagacgga
aaccctgttatctgccataccctgcccctgccagagggattccaggtggtgaaggtgggt
gcgaatggtgaggtggaaacagtggagcaggatgagctccagcaccaagaggaacagcag
gtccagcctgaggaggaggaggaagagctgcactgtgagccccagcctgaagaaccacaa
tgggccaaggaccccgactaccagcccccagccaagaaaaccatcaagaaggcaaaaaag
agcacgctgcgctacaacacagagggggataaagacaacatggacgtgtctgtgtatgat
tttgaggaggagcagcaggaagggatgctctctgaagtcaacgcagagaaggtggtgggc
aacatgaaaccccccaaacccaccaaaattaagaagaaaggtgtgaagaaaacattccag
tgtgagctgtgtagctacacctgtccccgccgctccaacttggaccgacacatgaaaagc
cacacagatgagaggccccacaagtgccatctgtgtggaagggccttcaggactgttacc
ctgctaaggaaccacctcaacacacacacaggaaccagaccacacaagtgtcaagattgt
gacatggccttcgtgaccagtggagagctggtccgacatcgtcgctacaagcacactcat
gagaaacccttcaagtgctccatgtgtgactatgccagtgtagaggtgagcaagctaaag
cggcacatccgttcccacactggggagcgtccgttccagtgcagtctgtgcagctacgcc
agcagagacacctacaagctgaagagacacatgaggacacactcgggagagaagccgtac
gagtgctatatttgccacgcccgtttcacccagagtggaaccatgaagatgcacatcctg
cagaagcacacagagaacgtggctaagttccactgcccccactgtgacacagtcatcgcc
cgaaagagtgacctgggcgtccacctgcgaaaacagcactcgttcattgagcagggcagg
aaatgtcgttactgtgatgctgtgttccacgagcgctacgcactcatccagcaccagaag
tcccacaagaacgagaaacgctttaagtgtgaccagtgtgattactgctgcagacaggag
cgccatatgctgatgcacaggcgcacccacacaggagagaagccttacgcctgtagccag
tgtgagaagaccttccgtcagaagcagctcctggacatgcacttccggcgttaccatgac
cccaactttgtgcccaccgcctttgtgtgcaccaagtgtggcaaggcctttacccgcagg
aacaccatggccagacatgcagagaactgtaacggggatcctagtgaaggagagaacgga
tccccacccaagagaggacgaggtgggaggaagaggaagatgcgctcaaggaaggacgaa
gatgacgatgatgatgatgatgacgacagtgaggacaatgctgatcctgagctggatgac
attgatgaagaggatgaggaggctgaggcagcactgctggaggaagaggaggaggagatg
atggagttggagcaggctccacccaccaaacctattcctgcccctgtagagccacctgtc
aagaggaaacgcggcagacctcccaagaacatccccaaaccctcccctcccgccaaagcc
agcaaggctgcccccaaaggcaaggctgcttcagctgcagccgtcatccaggtggaggat
gagaataccggcgccatagagaacatcatagtgaagaaggagcaagaggctgaacaggct
gccccagaggtggtggtggagcaaccagaggaggcaggggtggagacggtggagctgcct
gtagcagacgctgcccccaacggagacctcacccctgagatgatcctcagcatgatggac
cggtga
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