Oncorhynchus tshawytscha (Chinook salmon): 112218542
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Entry
112218542 CDS
T05605
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112218542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112218542
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112218542
mRNA degradation factors
5'-3' decay
Decapping complex
112218542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
Pdc1_Ge1
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
112218542
NCBI-ProteinID:
XP_024235180
LinkDB
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Position
LG19:25846366..25880126
Genome browser
AA seq
1422 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSKTSFNGELNGLLGADLIGAGDR
STMAESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHVRRPEDTPLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNDTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGTMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLF
LPHSNSNNGFGFSDHLTDMSVEGLSSDKESGCGSENDLCKIPALADFLSPSGTAAMPKLM
TPDAFMTPTASVPASPGSSASSLTIVTAMSSNSDSGASDGNVCRGGEELTQSPKMSVESN
SILIAGLGDNMPMYHLPQETTPHTLMFPLTYPLRPLQGLPSPNPPLSLDPQVIEPMLIQQ
ASPTRARSPDVISSASTAMSQDIPEIASETLQRGLGGVSGAESRETLPALHTDSMASAAS
ALHLLSPRNRNSSDHGHLPLELGAVVGAVEAEQRLSNTPSLLENALSQENAAASCSDNNV
SHPWPAAPDITRETRNSLRDNGLGDCSREEIKDRHMSSPYHRRTYHLTQNDSQDASAEQS
DHDDEVASLESSSGNCGTRSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPE
QHHQQMNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVMVS
QQEHEQRRMERILAEGHTRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPPTIT
KSLEPVTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKD
AFQGIVLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQLQQ
MIDTFQNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQQA
AVNSSIMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVLYV
CETIDSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRD
HMSAVLSQVRQKLFQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacccgggaacagcgttgatgcttctccaagtgagaaccaaagcaaaaca
tctttcaatggtgaattgaatggacttctgggagcagaccttataggagcaggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacacccaagagtgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatctaacaatgtt
gaaattgtggccagtcgagactcaagcattgacagcaaggcacgtggcagcaacaaggta
aaaatccagcctgtcgccaagtatgactgggagcataagtattactacggcaacctcatt
gcggtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctcctgaagggcttcactggtgcagtc
acagatctggcctttgcacacctggactccaccctgctgggatgtgttgacgaggccggt
aacctggtcatctggcagctcacctgccatagcagcaagatcctcgatcaagtcattgtc
cacgtccggaggcctgaggacacacctctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccctactg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaatgacacctgg
ccagtagatgccactgacctgaaggacggagttataaccataaaaggacatacagatcgc
atcagtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccattctggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagaa
tttctactcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccgccagatgaggagagcgagagtatgactgcagatggcaac
cagggcacaatggaatccaaagctgggatccaaatcaagctatattgtgttcacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggctctggctcatccttgttc
ctgcctcactcaaactcaaataatggctttggtttttcagatcacttgacagacatgagt
gtggaaggtttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaag
attcccgctcttgctgacttcctgtccccctccggcactgctgctatgcccaagctcatg
acccctgacgccttcatgacccccactgcttcggtcccagcctccccaggcagcagtgcc
agcagcctgaccatagtgacagccatgagcagcaactctgacagtggcgccagtgatggt
aatgtctgcaggggaggagaggagctgacccagagccctaagatgtctgtggagagcaac
tccatcctcatcgcaggcttaggggacaacatgccgatgtaccatcttccacaagagacc
actcctcatacgctcatgttccccctcacctaccccctccgccctctacaggggcttccc
tctccaaacccgcccctctcgctggacccgcaggtcattgagcctatgctgattcagcag
gcctctcctacccgggcccgctctccggacgtcatctcgtctgcctccacggccatgtct
caggacatacctgagatcgcctctgagacactgcagcgaggcctggggggggtgtctgga
gctgaatctcgagaaactctcccagccctccacacagacagcatggcttctgcagcctca
gctcttcacctcctctctccacgaaaccggaacagctctgaccatggccatctacccctg
gagctgggtgctgtagtaggagcagtggaggcggaacagaggctcagtaacaccccctca
ctactggagaacgccctgtcacaggagaatgccgctgcctcctgctcagacaacaatgtg
agccacccgtggcctgcagctcctgacatcacacgggaaacacgcaacagcctgcgagac
aatggcctgggagactgctcgagggaggaaattaaggacagacacatgtcctctccatac
cacagacgcacctaccacttaacccagaatgacagtcaggacgccagtgcagaacagagt
gaccatgacgatgaggtggccagtctagagtcgtcttcagggaactgtggaaccaggtcg
tctcaaagactgccagtgaaggagtggaagagttctcccagaggctcccctaaacttaag
aggaagagtaaaaaagatgatggggatgcatctcatgcctctcagtccaggcagcctgag
cagcatcatcagcagatgaacccagaggtgctggaagaactcctgattttgctccgtaac
cagcagagggagatagcggagctccatcagagtcagctggagctgcttcagagagtgacg
ggccacatggatgccgtgcagagctctgtcatagcccacgtagagcacgtcatggtcagc
cagcaggagcacgaacagaggagaatggagagaatcctagcagagggacacacccgtaac
cagcagctccaggagcatctctcgcagcagctgggtcaaactctcagtaacaccctttgt
aatcggctggacaagactctccgagaggagatgaagaagactgttcctcccactatcacc
aagagcctggagcctgtcactgcccaaatgagtaacaccattgctgctaagctgacggct
gtggaggcagcactgaaggagaacgttagcaaagtcgtgaagtcaaagaacaccacagat
gctattggccgagcagctgccgaggcaatgcaggggcctatccaggctgcctacaaggat
gctttccagggcattgtgctgcctgtgtttgagagaggctgccagtctatgttccagcag
atcaatgagagcttcaagcagggcacccatgagtatatccagcaactggagacccatgtg
aagaacaagaagcagcatgagcaggaagcacgggatcctatgattggccagctgcaacag
atgattgacacgttccagaactcaacggatcagctggccaccaccatcacagcaagtgtc
cgctctgaggtccagcatcagctccacatgacggtgggaaatttgcaggactcgatcctg
acccaggtgcagcgcattgtgaagggtgaggtgagtatggccatgaaggagcagcaggca
gctgtgaactccagcatcatgcaggccatgcgctctgctgcaggcacgcctgtccccacc
gcacacctggactaccaggcccagcaagccagcatcctgcagctgctgcagcagggacag
ctcaaccaggccttccaacaggccctgtcagcctctgacctgaacttggttctctatgtg
tgcgagaccatcgactcccagcaggtgtttggccagcatccctgccccctcatccagcca
gtgctgctgtccctaatacagcagctgtccactaacctggccacacgctctgagctcaag
atcagttacttggaggatgctgtgatgaacctggaccatggtgatccggtgacgagggac
cacatgagtgcggtgctgtcccaggtccgacagaagctgttccagttcctgcagtcagac
ccacacagtcctctcagcaagagagcccggcgcctggtgatgatgcttcagggcctggtc
aatcactag
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integrated database retrieval system
