Oncorhynchus tshawytscha (Chinook salmon): 112218592
Help
Entry
112218592 CDS
T05605
Symbol
blm
Name
(RefSeq) Bloom syndrome protein homolog isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440
Homologous recombination
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112218592 (blm)
03460 Fanconi anemia pathway
112218592 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112218592 (blm)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112218592 (blm)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112218592 (blm)
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
112218592 (blm)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
112218592 (blm)
Bloom's syndrome complex (BTR)
112218592 (blm)
FA (Fanconi anemia) pathway
112218592 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
BLM_N
BDHCT
RecQ_Zn_bind
Helicase_C
HRDC
RQC
ResIII
Motif
Other DBs
NCBI-GeneID:
112218592
NCBI-ProteinID:
XP_024235274
LinkDB
All DBs
Position
LG19:complement(29121609..29152270)
Genome browser
AA seq
1495 aa
AA seq
DB search
MMSSLPQNNLKEQLERHSNAAQRKLSLSKPKPGTFCFKKKSTSGITKVEVHTKVNSSNGL
TNRSVNVPHDNAVIKPPLTFSTKPERPLAKINFSSVNPKSKYEAISPVLTPFSGRKPIPA
VSASKISPALTKSDSLITGSNGSKPTGLDSSFGIPLDGWDDFDDFETPVKGRSTLPSPGI
SGRCAKVTPVSSVEQLDTNTHRSDKYVPLRALNTKTNSRHRNKCSLDGTEQGTLTMEDSQ
DASESASTAPRDNPIQDPAEWEHWEVDDSPIKMVRRRPSAYHAKSVLSDSEDENITAPGP
VEKIDHQSKWNETDVIDIDDKSELDGDLDFIPPSPSPEDFSHSTSTKETRLKSAGSAVRK
DISPESTRGSVSSLQRVSDGLLKERKVTNPKSEDQLLSIMESICALVDSIPDHELLGLSC
GTELLLQRAHRKRIIATGSSDTSSRTQQPDSTVLESRFSEKTTFSFATPSVMSSTTCLPK
GKGDSSMKALPFRRSSVISVDYDSSVFEDSDCMINVQTPGISWRPSTQENPIFTRDKKKA
STIGQSNCDSPSNYGIFKKQIGDVAQSNFFFSPKSPAAAVQMTGESSTQASVAQAPAVTE
PDDFFIDDFDIDDFNDSDIPDYFEPPSSSASRQDSSSISKAVREGGPSTSTWQKKPATPA
PVAKPPKITSPEPTYRNPAHDRFRGFNFPHCPEMMKIFHKRFGLHQFRFNQLEAINATLL
GEDTFVLMPTGGGKSLCYQLPACVCAGVTVVISPLKSLIVDQVQKLTTLDIPATSLSGEK
TDSEAARIYLQLSKKDPIIKLLYATPEKVCASGRMISALQNLYERGLLARFVIDEAHCVS
QWGHDFRPDYKRMYELRQKFPKVPIMALTATATPRVQKDILNQLQMTQPQVFTMSFNRNN
LKYAVLPKKPKKVDEDCIDWIKKNYPRDSGIVYCLSRNDCDNMADSLQRAGILALAYHAG
INDKDREYVQTKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAG
RDGEISHCILFYSYSDVIRIKRILTMDKDGNHHTKATHLNNLHSMVHFCENVMDCRRIQL
LAYFGEHKFNPGFCKEHPDVICDNCARPNQYKARNVTEDVKKIVRFVQENCEKVGSRYSK
SANQNRLTLNMLVDIFLGAKTARVQSGMFAIGKAYSKHNADRLFKKLVLDHLLVEDLYIT
ANSQAVAYISAGPKAINVLGGHMQVEFYETESASSIRKHKTAVAKDVSKSEEMVQKCLQE
LTDLCKRLGKVFGIHYYNIFSTATLKKIAETLSADPDVLLTIDGVTEDKLEKYGADVIAL
LQKYSEWKLPVEEQSNTTEGSSTMAWIDTSRGRGDDEEDCYEDDAGSSSYFNSNNGRGAK
RKKAPAFKKSKKRKGYTNSNSKGKYSNNGSWTGSNSRGGSKGRGQQQDVRQQQGGAQGLQ
QQAQWGGGPALWPSPYHKQTAGHSSNQPSLYCRSITPGHTWSLTDGFWSSKETPS
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccagtcttcctcaaaataatttgaaggaacaactcgagagacatagcaatgct
gctcagagaaaactgtcgttgtctaaacctaaaccagggacattttgtttcaagaagaag
tccacatcaggtatcaccaaggtggaagttcacactaaggtaaacagctcaaatggttta
acaaacaggagtgtcaatgttcctcatgataatgcagtaattaaacctcctttgacgttt
tcaaccaagcccgaaagacctctcgccaaaatcaacttctcctcagtcaatcccaaaagc
aagtatgaagccatcagtcctgtattaacccccttttcggggaggaaacccatcccagct
gtgtctgcttcaaagatctcccctgctttgaccaaatctgatagcttgatcacaggtagc
aatggcagcaaacccacaggacttgatagctcttttggtattcccctggacggatgggat
gattttgatgactttgaaacccctgtcaagggcagaagtactctaccaagcccagggatc
tcaggtaggtgtgccaaggtgacacctgtttccagtgttgaacaattggatactaacaca
cacagatcagacaaatatgtccctctacgagcgctgaatacaaagaccaacagccgtcat
agaaataagtgtagtcttgatgggacagaacaaggtactctcacaatggaggactcacaa
gatgcttcggagtctgccagtactgctccaagagacaatcccatccaggatccagcagag
tgggagcactgggaggtggacgattctcccattaaaatggttagaagacgaccttctgct
tatcatgccaagtctgtgctgagtgacagtgaagatgagaacatcactgcacccggtcca
gttgaaaagatagatcatcaaagtaaatggaatgagacagatgtcatagacattgatgac
aagtccgagctagatggagacctagatttcatccccccttccccaagtccagaggatttc
agtcattctacttctacaaaggaaacaagattgaagtcagctggctctgcagtccgtaaa
gacatcagtcctgaatcaacaagagggtcggtgtcgagcctacaaagagtgtctgatggt
cttctgaaagaaagaaaagtcaccaatccaaagtctgaagatcagctcttgagtatcatg
gagtccatctgtgctctggtggattccatccctgatcatgaactattaggcctgtcctgt
gggacagagctcttactgcagcgggctcataggaaaaggataattgctactggcagcagt
gacacatcttcaaggacacaacagccagacagcactgtcttggaatccagattcagtgaa
aagactactttttcctttgctactccaagtgtcatgtcttccaccacttgcctgcccaag
ggtaaaggagattcttccatgaaagcccttcccttcaggaggtcctcagtcatatctgtg
gactacgacagtagtgtttttgaggactctgactgtatgatcaatgttcagactccaggc
atctcttggagacccagcactcaggaaaatcctattttcactagagacaagaagaaagca
tccacaataggccaaagtaattgtgactctccatcgaattacggtatcttcaaaaaacaa
attggtgatgtggctcagtcaaatttcttcttctcaccgaagagcccggcagctgctgta
caaatgactggggagagcagtacccaagcctctgtggcacaagccccagcagttacggag
ccagacgatttcttcattgatgactttgacatagatgacttcaatgattcagatatccct
gattactttgaacccccaagctcctcagcgtcaaggcaggactccagttctatctctaaa
gcggtgcgtgagggaggaccaagtacatcaacatggcagaagaaaccagctacaccagct
cctgtggccaagcctcctaaaatcacctctcctgagcccacatacagaaaccctgctcac
gatcgcttcagaggcttcaacttcccccactgtccagagatgatgaagattttccacaag
cgctttggtctccatcagttccgattcaatcagttggaagccattaatgctacgttgtta
ggtgaagacacatttgtcctgatgccaacaggagggggtaaaagtctttgttaccagctg
ccggcctgtgtgtgtgcaggagtcactgtggtcatctcaccactgaaatcactcattgta
gaccaggtccagaaactcactactctggatattcccgccacaagtttgtctggtgagaag
actgacagtgaagcagccaggatctacttgcagctgtccaagaaggaccccataattaaa
ttgctctatgcaactcctgaaaaggtgtgtgcgagtggcaggatgatcagtgcccttcag
aacctgtatgagagaggtcttctagcacgctttgtcattgatgaggctcactgtgtcagt
cagtggggccatgacttccggccagactataagcggatgtacgagctgcggcagaagttc
cccaaagtgccgatcatggccctgaccgccactgccaccccccgcgtccagaaggacatc
ctcaatcagttgcagatgacccagcctcaggtgtttaccatgagcttcaacagaaacaac
ctcaaatatgctgtgttacccaagaaacccaagaaggtagatgaggactgcattgactgg
atcaagaagaattatccacgtgattctggcattgtgtactgcctgtcccgtaatgactgt
gacaacatggctgacagtcttcagagagctggtatactagcactagcctaccatgcaggc
atcaatgacaaagacagagaatatgtgcagaccaaatggatcaatcaggatggctgccag
gtcatatgtgccaccatagcctttggcatgggcatcgacaagcctgatgtgcgctatgtg
atccatgccagtctccccaagtcagtagagggctactaccaggagtcaggcagagcaggc
agggacggagagatctctcactgcatcctcttctactcctactctgacgtcatccgcatc
aagagaatcctcaccatggacaaagatggaaaccaccataccaaagccactcacttgaac
aatctgcacagtatggtacatttctgtgagaacgtgatggactgccgaaggatacagttg
ctggcttactttggagagcacaagttcaacccaggcttctgcaaggaacaccctgatgtc
atctgtgacaactgtgccagacccaatcaatacaaagcaagaaacgtgactgaagatgtg
aagaagattgtgagatttgtccaggagaattgtgaaaaagttggctccagatacagcaaa
tctgcgaaccaaaaccgactgactctgaacatgttggtggacattttcttgggtgctaaa
accgcccgtgtccagtcagggatgtttgcgataggaaaggcttactccaaacacaacgct
gaccggctgttcaagaagctggttctggatcaccttctggtggaggacctgtacatcaca
gccaacagccaggcagtggcatacatctctgctggacccaaagccatcaatgtcctcggg
ggacacatgcaggtggagttctatgagaccgagagtgcctccagcatcaggaagcacaaa
actgctgtggccaaggatgtctccaagagcgaggagatggtccagaagtgtctgcaggag
ctcactgatctgtgcaagaggttgggcaaagtctttggcattcactattacaacatcttc
tccactgccaccctgaagaagatagccgagactctgtcggccgacccggatgtgctgctg
acgattgatggtgtgacggaggacaaactggagaagtatggagcagatgtcatcgcgctt
ctgcagaaatactctgagtggaagctacctgtagaggagcagtctaacaccactgaagga
agctccactatggcatggatagacacaagcagaggccgcggagacgacgaggaggactgt
tatgaggacgacgctggatcttccagttatttcaacagtaacaacggcagaggagcgaaa
aggaaaaaggcccccgccttcaagaaatccaaaaagagaaaaggatatacaaactccaac
tctaaagggaagtacagcaacaatgggtcgtggacagggtccaactccagaggtggatct
aaaggccggggtcagcagcaggacgtgcgtcagcagcagggcggggctcaaggccttcag
cagcaggcccagtggggaggaggcccggctttatggccctccccataccacaaacaaaca
gccggccattcctcaaaccagccttctctgtactgtaggagtataactcctggccatacc
tggagtctaacagatggattttggagtagcaaggaaactcctagttag
DBGET
integrated database retrieval system
