Oncorhynchus tshawytscha (Chinook salmon): 112218673
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Entry
112218673 CDS
T05605
Name
(RefSeq) interferon regulatory factor 8
KO
K09447
interferon regulatory factor 7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04620
Toll-like receptor signaling pathway
otw04621
NOD-like receptor signaling pathway
otw04622
RIG-I-like receptor signaling pathway
otw04623
Cytosolic DNA-sensing pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
112218673
04621 NOD-like receptor signaling pathway
112218673
04622 RIG-I-like receptor signaling pathway
112218673
04623 Cytosolic DNA-sensing pathway
112218673
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112218673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112218673
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
112218673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
OYE-like_second_a-b
Motif
Other DBs
NCBI-GeneID:
112218673
NCBI-ProteinID:
XP_024235454
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Position
LG19:complement(33985185..33990055)
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AA seq
455 aa
AA seq
DB search
MTEVRGSALKMQSRNPKPQFADWLIEQVWTGQYAGLCFVDNNKFRVPWKHISRKDCCEDD
SKIFRAWAVVSGKINTHPNDKAKWKTNFRCVLNNLTKRFMMVEDHSKDSDDPHKVYLIIN
NESNYGSPHIEEIAVEDYDIDIHSSLTSTGYTPPGMEHDNLLKLVNTIDLNRHTEEWAET
YIHTHHPVVPEDCYPFQPLIEPQPVSQNPSPPPVPVPVQQPYNHVNQDALLNLPAAQPSL
CDLEITISYRRREMLKTQVSGPMVQLHYQCDVPEPNAQTLCFPSTDGLLDHKQIEYTNCI
LGSVQRGLLLEVRNTGIYGYRQDKCHVFSSTSDPREAHPEPRKMPQNEMVQLLSFDKYMT
ELIAFKENRGGSPDYTIHMCFGEKFPDGKPLEKKLIIVKVVPLICRHFHEMAQGEGASSL
QNDNISLQISHHNSLMELISATWPDGPEHTMGQYF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagtacgtggctcagcattaaagatgcaaagccgcaaccccaaacctcagttt
gcggactggctgatagaacaggtgtggaccgggcaatacgccgggttgtgttttgtggac
aacaacaagttcagagtcccgtggaaacacatctctaggaaggactgctgcgaggacgac
agtaaaatattcagggcatgggcagtggtcagtggtaaaatcaacacgcatcccaatgac
aaggcaaagtggaagactaacttccgctgtgtactgaacaacctgaccaagcgtttcatg
atggtggaagaccactccaaggactcagacgatccccataaagtctacctgattatcaac
aatgagtctaactatgggagcccacacatagaggaaattgctgtggaggactatgacatt
gacatccacagctctctcacctctacaggctacacccccccaggcatggagcatgataat
ctactcaagcttgtgaacaccatagacctgaaccgtcatactgaggagtgggcagagacc
tatatacacacacaccacccagtggtaccagaagactgctaccccttccagcctctaata
gagccccagccagtctcccagaacccctcaccaccaccagtcccagtaccagtacagcag
ccatacaaccacgtgaaccaggatgccctgctcaacctgcctgctgcccagccgtctctc
tgtgacctggagatcaccatctcctacaggaggagagagatgctgaagacccaggtgtca
ggccccatggttcagctccactaccagtgtgatgtccctgagcccaacgcccagaccctc
tgcttccctagcactgacggcctgctagaccacaaacagattgaatacaccaactgcatc
ctagggagtgtccaaaggggtcttctcctggaggtacgaaacacgggtatctatggttac
cggcaggacaaatgccatgtgttctctagtactagtgaccccagagaggcacaccctgaa
cccaggaagatgccccaaaatgaaatggtacaacttttgagcttcgacaagtacatgact
gagctgatagcatttaaggagaacagaggaggctctcctgactataccatccacatgtgc
tttggcgagaagttcccagacggaaaacccctggagaagaaactcatcattgtcaaggtg
gttcccttgatctgtcgtcacttccacgagatggcccagggggagggggcatcttccctc
cagaacgacaacatcagcctgcagatctcccaccacaacagcctgatggagcttatcagt
gccacctggcccgacggcccagagcacaccatggggcaatacttctag
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