Oncorhynchus tshawytscha (Chinook salmon): 112218681
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Entry
112218681 CDS
T05605
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112218681 (lrrc4ca)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Sp38
FlK
Ig_6
DUF4293
Syndecan
CMV_1a
Motif
Other DBs
NCBI-GeneID:
112218681
NCBI-ProteinID:
XP_024235471
UniProt:
A0AAZ3QT00
LinkDB
All DBs
Position
LG19:35350016..35439230
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AA seq
645 aa
AA seq
DB search
MLNKMNSSWQQQTMRGPRWNRVLSDPLFVLLLALQLLAVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLTVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPASHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGMAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENVLSYFTTVTVETIEPVHDEGRTTVGHNVGPTP
SAGSWETVSSTSTTTTTARTPLSTRVTEKTFTIPVTDLNGGSMTGLDEVMKTTKIIIGCF
VAITLMAAVMLIIFYKMRKQHHQQNHHAPQRTIEIINVDEDCVTGGPAMEGHLTLPPLEH
EHLNHYNTYKTAYNHVSTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaaaatgaactcttcttggcagcagcagacgatgagaggtcctaggtggaac
cgggtcctgtccgaccctttgtttgtgctgcttctggccctccagctcctggcggtggcg
ggcctggtgcgcgcgcagacctgcccatccgtctgctcctgcagcaaccagttcagcaag
gtgatctgcacccggcggggacttcgtgatgtcccagacggcatctccaccaacacacga
tatctgaaccttcaggagaacctcatccaggtgatcaaggtggacagcttcaagcacctg
cggcacctggagatcctccagctcagcaagaaccacatccgcaacattgagattggggct
ttcaacggcctggctagtctcaacaccctggagctgttcgacaaccgcctcaccaccatc
cccaacggggcctttgagtacctctccaaactcaaggagctgtggctgaggaacaaccca
atcgagagcattccctcgtatgcgttcaacagggtgccctcactacggaggctggactta
ggggaactgaaacgcctctcgtatatctcagagggagctttcgagggactcagcaacctg
cgctacttgaacctaggcatgtgcaatctcaaggagattcccaacctcatacccctggtc
aagctggacgagctagagatgtcagggaaccagctgacggtcatcagacccggctccttc
aaagggctgatccatctgcagaagctgtggatgatgcacgcccagatccagaccattgag
aggaactcctttgatgacctgcagtcgcttgtggagctcaacctggcccacaacaacctc
actctgctgccccatgatctcttcacccccctgcaccacctggagagagtccacctccac
cacaacccctggaactgcaactgtgacatcctgtggctcagctggtggctcaaagagatg
gtgccggccaacaccagctgctgcgcccgctgcagttccccagcaagccacaaggggcgc
tacattggtgagctggatcagaactatttccattgttatgcaccggttattgtagagcct
ccggctgacctgaacgtgacagagggcatggcagcggagctgaagtgcagggccagttct
ctgacctcagtcagttggattacacctaacggctccattatgacccacggtgcatacaag
atccgcatttccgtgctaaacgatggcactctcaacttcaccaacgtcaccatgcaggac
acgggcacctacacctgcatggtgagcaactcagccggcaataccacagcatctgccacg
ctcaacgtgtcatccacagagaacgtcctcagctactttaccacagtgacagtggagacc
atagagccagtgcatgacgaggggcgcaccacagttgggcataatgtgggccctaccccc
tctgccggctcctgggagaccgtctcatccacctctaccaccaccaccacggcccggaca
cccctctcgacccgggtcacagagaagacctttaccatccccgtcacagacctgaacggt
ggctcaatgaccggcctggacgaggtgatgaagaccaccaagatcatcataggctgcttt
gtggccatcaccctcatggccgctgtcatgctcatcatcttctacaagatgagaaagcag
caccaccagcagaatcaccatgcaccccagcgcaccatcgagatcatcaacgtggacgag
gactgtgtgacgggcgggccggccatggagggccacctgactcttcccccgctcgagcat
gagcacctcaaccattacaacacctataagactgcgtacaaccacgtctccaccatcaac
tccatacacagctcggcgcacgaacctttgttaatccgggccagctcgaaagacaatgta
caagagacccagatctaa
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