Oncorhynchus tshawytscha (Chinook salmon): 112218685
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Entry
112218685 CDS
T05605
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
112218685 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112218685 (rag1)
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112218685 (rag1)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112218685 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4
zf-C3HC4_2
TRAF3_RING
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-RING_10
zf-RING_2
zf-RAG1
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
112218685
NCBI-ProteinID:
XP_024235475
LinkDB
All DBs
Position
LG19:complement(36141269..36148421)
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AA seq
1078 aa
AA seq
DB search
MEEGTLETYAPRCSMPAELHHPYSKFSDWKFKLFRVRSMERAPLPGEMQLERGALSGVVA
SAPLEETVGDVVGLPGSVMKLCLGGKSKENVEGPGKRVDLKLQEMDTHMNHLRCLCRLCG
GALRKAKGPEHEVQGLLDEASRSALRRMGCKATSWPEVILKVFKVDVAGDMEVVHPPFFC
QRCWTLAMRGGGFCSFSRTHVPGWRPHTTLCLLCHPKKPSLQRRGRKRRKPTRGAQRLAK
RTKWDIQDNAAIVGEKRAWRTVIDPHQGPGLRPWVRSSVQRAQWVKSITLCQKEHLSARL
LSEDLPVDFLSSVTCQVCDHLLSEPVQSPCRHLFCRSCIAKYIYSLGPHCPACTLPCGPA
DLTAPAKGFLGVLHSLPLLCPRESCGEQVRLDSFRAHCLGHHLEEVDGDHKSAENSLDNF
LPVNKGGRPRQHLLSLTRRAQKHRLRDLKTQVKVFAEKEEGGDTKSVCLTLFLLALRAGN
EHRQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTL
RAAEKELLPGYHPFEWQPALKSVSTSCHVGIIDGLSGWIASVDDSPADTVTRRFRYDVAL
VSALKDLEEDIMEGLRERGLEDSACTSGFSVMIKESCDGMGDVSEKHGGGPAVPEKAVRF
SFTIMSVSIQAEGEDEAITIFREPKPNSEMSCKPLCLMFVDESDHETLTGVLGPVVAERN
AMKHSRLILSVGGLSRSFRFHFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASQN
MTLHSVTRSHDENLERYELWRTNPHSESAEELRDRVKGVSAKPFMETQPTLDALHCDIGN
ATEFYKIFQDEIGEVYHKANPSREQRRSWRAALDKQLRKKMKLKPVMRMNGNYARKLMTR
EAVEAVCELVCSEERQEALRELMGLYIQMKPVWRSTCPAKECPDELCRYSFNSQRFAELL
STVFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSK
TFELEDVLKHHWLYTSKYLQKYMEAHKDSAKALQATIDTVGSQETQEDADMSLDVPDF
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggaggagggtaccctggagacatatgccccccggtgctccatgccggccgagctccat
catccctactccaagttctcagactggaagttcaagctgttccgggtcaggtccatggag
agggccccactgcccggggagatgcagctagagagaggggccttgtctggggttgtggct
tctgcacccctggaggaaactgtgggggatgtggtgggtctcccagggagtgtgatgaag
ctttgcctggggggtaagagcaaggagaacgtagagggcccgggaaagagagtggacctg
aaactccaggagatggacacacacatgaaccacctcaggtgtctgtgccgtctctgtggc
ggggccctgaggaaagccaaaggtccagagcatgaagtccaggggcttctggacgaggct
agcaggagtgccctgcgtaggatgggctgcaaggccaccagctggccagaggtcatcctc
aaggtcttcaaagtggacgtggcgggggacatggaggtcgtccatccgccattcttctgc
cagcgctgctggacattggccatgcgaggagggggcttctgcagcttctccaggacccat
gtccctgggtggagaccccacaccaccctctgcctcctctgccaccccaagaaaccctca
ctacagaggagagggaggaagaggcggaagcctactcgtggagcccaacgcctggctaag
aggaccaagtgggacatccaggataacgctgctattgttggtgagaagagagcctggaga
acagtgatagatcctcaccagggacctggacttagaccctgggtgagatccagcgtccag
agagctcagtgggtgaagagcatcaccctctgccagaaagagcaccttagtgccagactg
ctgtccgaggacctccctgtggacttcctgagctcagtcacctgtcaggtgtgtgaccac
ctgttgtctgagcccgtccagtccccctgcagacacctcttctgccgcagctgcattgct
aaatatatttactctctggggccccactgcccggcttgcaccctgccctgcggccctgcc
gaccttactgccccagctaagggcttcctgggggtcctgcactccctgccgctgctttgc
cccagagagagctgtggggagcaggtacggctggactccttcagagcccactgcttgggt
caccatctggaggaagtggatggggaccacaagtcagcggaaaatagcctggacaacttc
ctgcctgtcaacaaagggggaaggccccgacagcatctcttgtcactgacgaggcgtgcc
cagaagcaccggctgagggacctgaagacccaggtgaaggtgtttgcagagaaggaagaa
ggtggagacaccaagtcggtgtgcctgaccctgttcctgctagctttgagggctggaaac
gaacaccggcaggcagacgaactggaggccatgatgcaaggcaggggctttggcctgcat
cctgctgtgtgtctggccatccgggtcaacacgttcctgagctgcagccagtaccacaag
atgtaccgcaccgtcaaggccaccagtgggcgccagatcttccagcccctgcacacctta
cgcgctgcagagaaggagctcctcccaggctaccacccctttgagtggcagccggccctc
aagagtgtgtccacatcctgccatgtggggatcattgacgggctatcagggtggatcgct
tcggtggacgactccccagcagatacagtcacgcgacggtttcgctacgacgtggcgctg
gtgtcagccctgaaggacctggaggaggacatcatggaggggctgagagagcgaggcctg
gaggacagtgcttgcacctcgggcttcagcgttatgatcaaggagtcctgcgatggtatg
ggggacgtcagtgagaagcatggcggagggccggccgtcccggaaaaggctgtgcgtttc
tccttcaccatcatgtccgtctcaattcaagctgagggagaagatgaggcgatcaccatt
ttccgggagcccaagcccaactcagagatgtcctgcaagccactatgcctgatgtttgtg
gacgagtcggaccacgagactctcacaggtgtcctggggcctgtggtggccgaaaggaat
gctatgaagcacagccgtctcatcctgtctgtgggcggcctttctcgctccttccgcttc
cacttccggggcacgggctatgatgagaagatggtgcgagagatggagggtttggaggcc
tctggctccacttacatctgcacgctgtgtgactccactcgggcagaggcctcccaaaac
atgactctccactctgtcacccgcagccatgacgagaacctggagcgctacgaactttgg
aggaccaaccctcattctgagtcagctgaagagctgcgagaccgagtcaaaggcgtctct
gccaagcccttcatggagacccagcccacactggacgccctgcactgtgatatcggcaat
gccactgagttctacaagatcttccaggatgagataggggaggtctatcacaaggcaaac
cccagccgggagcagcgtcggagctggcgggccgccctggacaagcagctgaggaagaag
atgaagctgaagcctgtgatgaggatgaatgggaactatgcacggaagctgatgacccgg
gaggcagtggaggcagtgtgtgagctggtgtgctcagaggagcgtcaggaagccctgagg
gagctgatggggctctacatccagatgaagcctgtgtggcgctccacctgcccggccaag
gagtgcccagacgagctctgccggtatagcttcaactcccaacgcttcgcagagctgctc
tccaccgtcttcaagtacaggtatgacggaaagatcaccaactacctgcacaagaccttg
gcccatgtgccagagattgtggagagggatggctccatcggggcctgggccagcgagggg
aatgagtctgggaacaagctgttcagacggttcaggaagatgaatgcccgccagtccaag
acctttgagctggaggacgtgctgaagcaccactggctctacacatccaagtacctgcag
aagtacatggaagctcacaaggactctgccaaagctctgcaggccaccattgacactgtg
gggagtcaggagacacaggaggatgctgacatgtcactggatgtcccagacttttga
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