Oncorhynchus tshawytscha (Chinook salmon): 112218700
Help
Entry
112218700 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase Hakai isoform X1
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112218700
04131 Membrane trafficking [BR:
otw04131
]
112218700
04121 Ubiquitin system [BR:
otw04121
]
112218700
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112218700
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
112218700
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
112218700
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112218700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_Hakai
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
112218700
NCBI-ProteinID:
XP_024235508
LinkDB
All DBs
Position
LG19:complement(36792978..36796354)
Genome browser
AA seq
486 aa
AA seq
DB search
MYQNDTDLQGTDGSGILGGPDVRRRIPIKLISKQPVRNKDVNHSQRPLSRLPSKTQSNDE
EGFGFKQEDRFERKSGDVLGNQRRFPQPVFWDYKLNLVGEKDNTPVHFCEICGLPIKLYG
RMIPCKHVFCYDCALLHEKKMEKMCPGLTLYSCTDPVQRIEQCLRGLLYMCSIVPGCKRT
YLSQRDLQAHVNHRHMRASKAAGGGILPRLEPLHPQLASEPPDHFRRLPLPHLAKGHPLI
PPQQQGHDPYGQPPPASPSTPSSELGPSGLHRPPLGQETFRIATLTTRKHSNLITVPIQD
DSGDSPLPQSAQGMPPPHQHQGDYPGQPHHLMALPPQQQHYGPPPQPPPTLSHPMQHLPQ
GSGTPHLVYNQVPPMSSGLPPITPPPGHIMGQMPPYMNHPPPPGPLPQHGGPPVNTPHPH
HYNPSSMQQDRGTLSPPFNQPGGLSPGMWPAPRGTHPPRMQGPPPHGQMPGPPQHPDQSR
YHPYYQ
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaaaatgacactgatctacaaggcactgatggttcaggcattcttgggggccct
gatgtacgcagacggatccccattaaactgatatccaagcagccagtcagaaacaaggat
gttaaccactcacagagacccttaagcagactgccctccaaaacccagtctaatgatgaa
gagggctttgggttcaagcaggaagatagatttgagcgcaagtctggagatgtgttaggc
aaccagaggaggttccctcagcccgtgttctgggactacaaactgaatctggttggcgaa
aaggacaacacgccagttcatttctgtgagatatgtggccttcccataaagctctatgga
cgcatgattccctgcaagcatgtattttgctatgattgtgccctgctccatgagaagaag
atggaaaagatgtgtcctggtctcaccctatacagctgcacagatccggtccagcggatc
gagcagtgcctgcggggcctcctctacatgtgcagcatcgttccgggctgcaagcgcacc
tacttgtcccagcgcgacctgcaggcccatgtcaaccaccgacacatgagggcatccaag
gctgcaggagggggcattctaccacgccttgagcccttgcatccacaactggcctcagag
ccacctgaccacttccgtcgactaccactgccccacctggccaaaggacaccccctcata
cccccacagcagcagggacacgacccctatggtcagccccctcccgcctctccgtcaacc
ccctcttctgaactgggcccctctggtctccatcgccccccactgggtcaggagacgttc
cgcattgccacgttgactactcgcaagcacagcaacctcatcactgtgcccattcaggat
gactctggggactcgccccttccccagtctgcccagggtatgccccctccccaccagcat
cagggagactaccctggccagccccaccacctgatggccctcccaccccagcagcagcac
tacggcccaccccctcagccgccacccaccctcagccaccctatgcagcacctgcctcag
ggctccgggacgcctcatctggtctacaaccaggtccctcccatgtcctcaggcctgcct
cctatcaccccaccacccggacacatcatgggccagatgcctccctacatgaaccaccca
cctcccccaggccccctgccccaacacggtggtcctcctgttaacacgccccatccccac
cactacaatccaagctccatgcagcaggatcggggcactcttagcccgccctttaatcag
cccgggggactgagcccagggatgtggccagcccccaggggcactcacccgccccgcatg
caggggcccccaccccatggccagatgcctggtcctccccagcacccagaccagtcccgc
taccacccttactatcagtaa
DBGET
integrated database retrieval system