Oncorhynchus tshawytscha (Chinook salmon): 112218729
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Entry
112218729 CDS
T05605
Symbol
ppfibp1b
Name
(RefSeq) liprin-beta-1b isoform X1
KO
K27096
liprin-beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112218729 (ppfibp1b)
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112218729 (ppfibp1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
SAM_PNT
DUF16
DUF2089
Motif
Other DBs
NCBI-GeneID:
112218729
NCBI-ProteinID:
XP_024235557
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All DBs
Position
LG19:38351741..38400242
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AA seq
1019 aa
AA seq
DB search
MMSDASDMLAAALEQMDGIIAGSKAMDYSNGLFDCQSPTSPFMGSLRALNLLEDLRGVLE
LMDTEEREGLRCQIPDATADSLVDWLQQGHLMSNGHHISMGGDLYQERLSRLEGDKESLV
LQVSVLTDQVEAQGEKIRDLDMCLDEHREKLNATEEMLQQELLCRTALETQKQDLMAEVS
NLKLNSFEKDRLHFDFSDNEDMVLEMNELRYRVTEMESEKVQYEKKLKSTKSLMAKLSSL
KIKVGQMQYEKQRKENKLQALKEELAMLKRHLEGRDGELRRLHDETGFRGITPVGMDSGD
RVSHPDETLKLRLKEKHVEVQRMKKAVESLMAANEEKDRKIEELRQSLLRYKKVQDRSSM
QGKKDGESDESNSDSSLSVMSTTTTLVAMESERHALAGDEEVAGKSPDELEMHYGATEVS
SPTPSPSVQSACDPKRGPELDQPQPESEAGGQDESQEAPLSCDTLQTLDSPNSGSQDNLY
VSNSEKLFSATVQNKAVEGISKISEHPPKSPSLSHPVTTEDDRFGNKKARSSFGRGFFKI
KGGKRTASTPNLADTEREEGTDHLDLAGLPQRSANSDSTNTLTSVTSTTSPECKKKSKGI
KGLFGKLRRSQSTTFNLDDNLSEAVEFKRGGVRATAGPRLGWSRDLQRLPKNDLDTPFAR
WSKEQVCDWLQEQGLGLYLNMARVWISSGQTLLQGSQQDLERELGIKHPLHRKKLQLALQ
ALGSEEDDNKGKLDYNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVGSV
LHHLSIKRAIQVLRLNNYEPNCLRRRPSDENNITPAEISQWTNHRVMEWLRSVDLAEYAP
NLRGSGVHGGLMVLEPRFNVETMALLLNIPPNKTLLRRHLATHFNLLVGSEAQGLKQDCL
ENPDYTLLTATAKVKPRKMSFGSFGSLRKKRQDDSEEYVCPMDVEMPKGRSFQKGYELQL
YEDDIDRLEQMEDSEGTVRQIGAFSEGIQNLTSMLKDDEFFKEISNSPNPSITDDDSNM
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctgatgccagtgacatgttggcagcagccttggagcagatggatgggataata
gcaggctccaaggctatggactactctaacgggctgtttgactgccagtcgcccacctct
cccttcatgggcagcctgcgggcgctgaacctgctggaggacctccggggcgtgctggag
ctaatggacacagaggagagggagggcctgcgctgccagatccctgacgccaccgcggac
agcctggtggactggctgcagcagggacacctgatgtccaatggtcaccacatctccatg
ggtggggacctctaccaggagagactgtctcggctggagggtgacaaggaatccctggtg
cttcaggtgagtgtattgacagaccaggtagaggcgcagggggagaagataagggacttg
gacatgtgtctggatgagcaccgggagaaactgaacgccactgaggagatgctgcaacag
gaactcctgtgcagaacggctctagagactcagaaacaggacctgatggccgaggtgtcc
aacctgaagctgaactcatttgagaaggacagactgcactttgacttcagcgacaatgag
gacatggttctggagatgaatgaactgaggtacagagtgactgagatggagagtgaaaaa
gtacagtatgagaagaaactgaaatccactaagtcattaatggccaagctttctagcctg
aaaatcaaagtgggccagatgcagtatgaaaaacagaggaaggaaaacaaactgcaggcc
ctgaaggaggagctggcaatgctgaagaggcatctggagggaagggacggagagctgagg
aggttacacgacgagactgggttcagaggcatcacaccggttggaatggacagtggagac
agagtctctcacccagatgaaactcttaaattgaggctgaaagagaaacatgtggaagtg
cagagaatgaaaaaagcagtggaatcactgatggcagccaatgaggaaaaggatcgtaaa
attgaggagttgaggcagtcgctgctgcgctacaagaaggtccaggacaggagttcaatg
caagggaagaaagacggcgagagtgacgagagtaacagcgacagctccctctccgtgatg
tcaacgacaaccaccctggttgccatggagtcggagaggcacgctctagccggagacgag
gaagtagcagggaaaagcccagatgagctggagatgcactatggagctactgaagtgtct
tcgcccacacccagcccttcagtccagtcagcatgcgatccaaaaagggggccagagctg
gaccaacctcaaccagagagcgaggcagggggccaggatgagtcacaggaggcccccctt
tcatgtgatactctacagaccctggatagccccaattcagggagtcaggacaacttgtat
gtcagcaacagcgaaaagctcttttctgctactgttcagaataaggctgtggaggggatc
agtaagatcagcgagcacccgcccaagtctccctctttgtctcaccccgtgaccacggag
gatgaccgcttcggtaacaagaaggctcgctcctcctttggccggggcttcttcaagatc
aagggaggcaagaggacagccagcacccctaacctggctgacacagagcgagaagagggc
actgaccatctggacctggccggtctaccccagaggtcagccaacagcgacagcaccaac
acactgaccagtgtgacctccactacatcccctgagtgcaagaagaagtccaagggaatc
aaggggctctttggaaagctgaggagaagtcagtccaccacgttcaacctggatgacaac
ctatcagaggcggtcgagttcaagagaggcggagtccgagccacagcaggtcccagactg
ggctggtcccgtgacctacagcgattacccaagaatgacctggacaccccgtttgcccgc
tggtccaaggagcaggtgtgtgactggctgcaggagcagggactggggctctacctgaac
atggcccgcgtgtggatctcttctggacagactctgctgcagggctcacagcaggaccta
gagagggagctgggcattaaacacccgctgcacaggaagaagctccaactggccctgcag
gccctgggctctgaggaggatgacaacaagggcaaactggactacaactgggtgactagg
tggctggatgacattggcctgcctcagtataagacccagtttgatgaggggagggtggac
ggccgcatgctacactacatgacagtagatgacctgctatctctgaaggtgggcagtgtg
ctccaccacctcagcatcaagagagcaattcaggtgctgcgcctcaacaactacgagccc
aactgcctgcgccgacggccctctgacgagaacaacatcacgccagcagagatctcccag
tggactaatcacagagtgatggagtggctgagatcagtggacctggcggagtatgccccc
aacctgaggggcagcggcgttcacgggggactcatggtactggagccacggttcaacgtg
gagactatggccctgctgctgaacattccccccaacaagaccctgctgcggaggcatctg
gccacccacttcaacctgctggtgggctctgaggcccaggggctcaaacaggattgtctg
gagaatcccgactacaccctgctcaccgccaccgccaaggtcaagccgaggaagatgtcg
ttcgggagcttcggcagcctgaggaagaagaggcaggatgacagtgaggagtatgtctgc
cccatggacgtggagatgccaaagggacgtagcttccagaaaggctatgagcttcaactc
tacgaggacgacattgaccggctagagcagatggaggactcagagggaactgtgaggcag
ataggagctttctccgagggcatccaaaacttgactagcatgctgaaagacgatgaattt
ttcaaggagatctccaactcacccaaccccagcataacagatgacgattccaacatgtga
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