Oncorhynchus tshawytscha (Chinook salmon): 112218834
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Entry
112218834 CDS
T05605
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112218834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112218834
03036 Chromosome and associated proteins [BR:
otw03036
]
112218834
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112218834
Coactivators
SAGA/TFTC/STAGA complex
112218834
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112218834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
112218834
NCBI-ProteinID:
XP_024235809
UniProt:
A0A8C8ITT8
LinkDB
All DBs
Position
LG19:45036660..45058588
Genome browser
AA seq
999 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSNIKREGSTGAVSQFSGK
LRDQAGSLEPPQQGHPKAALNAEPIANQAMSNKIISASTSSITTGGVLNAGTNLQTYGAA
SQTISTAPPGSVTLPAQSTSFNRGTILGPAGTSAVTVPNPNITTTTTTTTIRTASPGLQS
FNGNTGALKLVNSPAASQVGSGSSTVVSTVSAGNSNIIVSMTSQPPSLPNFTGPQQSAVA
ITPTIALQRQPSPMAIASQNGVIDPKVSAVVTQGAGSLGATTSQVMNHSNTLMHTKMVAP
NQPVSAGQSIILGGSPPPVVVNSPISQPQSVASPTLTAGVKPTVNGVGQPTVTIVRPPSA
PVMATPVQQQRPGLLASTTRTAAPQLAVRPPQKTTIQLPPGFTIPPGMVLVRTDTGQLVM
VTQQVLAQAQAKTQQGQAAVSNISPQPGIPTAGANIRVSTPSQAPGTPQAVRLASPFQAR
MAQSPSPSSPAIQKAITVAPAGASVSVKMTTPQKAQSVITGGQALVKPGAVRPTITLNTA
AASASGSPIATVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKTLVQDLLDAKIE
PEEFTTSLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTSASALAVPSTSTIR
PRLPTTISPATGIVRSPTTALGVRRPGVQGVQTRMPMVITQTIRPQGVVTRGPSIIPGRS
PVGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIR
SCKDEAFLPPGLLHRRIMEAAKRFGVTEVPAETVNYISHATQARLRSMLEKVSTIAQHRT
DGGKDEEWYEPSTDVRAQLRFFEQLERMEKQRKDEQEREVLLKAAKSRARQEDPEQARLK
AKAKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGGSTSGTEVASGSGDGSSTAAS
SRQQLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagct
gtaagcgacttagtgggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattctaatatcaagcgagaaggatctacgggcgctgttagccagttctcagggaaa
ctgcgtgatcaagcggggtctctggagccgccacaacaaggacacccaaaagcggcgtta
aacgcggaacccatcgcgaatcaggcgatgtccaataagattatcagcgcttccacttct
tccatcactactgggggtgttttaaacgctggtactaatctacaaacatatggagccgca
tctcaaaccatttccaccgcaccaccaggatcggtaactttgcctgctcagtcgactagc
ttcaacagagggactattttgggtcctgctggcacatcagcggtgactgttcccaatcca
aacatcacaacaacaacaacaacaacaactatcaggactgcttcacctggtttacagagt
tttaacggtaacactggagctctgaagttggtcaactcgccagcagcttcccaagtcggg
tcaggcagcagcactgttgtaagtactgtcagtgcgggcaattccaatatcattgtgtcc
atgacttcacaacctccttctctgccaaactttactggacctcaacagtctgcagtggct
attactcccactattgcattgcaaagacagcccagccccatggccattgcctcacagaat
ggagtaatagaccccaaggtttctgcagtggtcacacagggtgcaggttccctaggggcc
accacctctcaggtcatgaaccacagcaacactctcatgcacactaaaatggtggcaccc
aaccagccagtctctgctggccaatcaataattctcggagggtctccccctcctgttgtt
gttaactcaccaataagccagccacagagtgtggcgagtcccactctcacagctggggtg
aaaccaactgttaatggagttggtcagcccacagtgaccatcgtgaggccccccagtgct
cctgtgatggctacccccgtacagcagcagagacctgggctgttagcaagtaccacgagg
actgctgcaccacagctggccgtcagaccaccacaaaagaccaccattcagttaccccct
ggatttaccataccacccggtatggtgctggtgcgtacggacacgggacagctagtgatg
gtgactcagcaggttctagcccaggcccaggctaagacccaacaaggccaggctgctgtc
tccaacatctccccccagcctggaatccccaccgccggggccaacatcagagttagcact
cccagccaggcccctggtacgccccaggctgtccgtctggcgtcccctttccaggcaaga
atggcccagtccccctctccctctagccctgctatacagaaggccataaccgtggcacct
gcgggtgcatctgtgtcagtgaaaatgaccacccctcagaaggcccagtctgtgatcaca
gggggccaggccttggtcaagcctggtgctgtacggcccactatcaccctgaacactgca
gcagccagtgcctctggaagccctattgcaacagtctcccaggaaatgcaggagaatgtg
aagaagtgcaagaacttcctgtccaccctgatcaaactggcgtcccacaactccccctcc
cctgacacatctaagaacgtcaagaccctggtgcaggatctactggatgctaaaatcgag
cctgaggaattcaccacgagtctgcaggctgagctgaaatcctctccacagccgtacctc
atccccttcctcaagaaaagcctccctgccctgcggctgtcccttctcaacaaccagcag
tctcttctggcctccacctccgcttctgccctggccgtcccctccacctccaccatcagg
ccccggctccccaccaccatcagccccgccacaggcatcgtcaggtcacctaccactgcc
ctgggtgtgagaagaccaggggtccagggggtccagacccgcatgcccatggtcatcact
cagactatacgaccgcaaggtgtagttacaagaggaccctctattatcccgggcagaagt
cctgtgggcattggtgcccaggcctctgccaatcagaagaagctgaatgagcctggaggt
gggacgttcagagatgacgatgacatcaatgacgtggcgtccatggcgggggtaaacctg
aacgaggaaaacgcccgcatcatggccaccaactctgagctggtgggcaccaagatccgc
tcctgtaaggacgaggccttcctcccgccaggcctgctgcacagacgcatcatggaggct
gccaagagatttggggtgaccgaggtcccagctgagacagtgaactacatctcccatgct
acccaggccaggctgagatccatgctggagaaagtgtccactatcgcccagcaccgcacc
gacgggggcaaggatgaggaatggtatgagccatcgacagatgtcagggcccagctccgc
ttttttgagcagctggaaaggatggagaaacagaggaaggatgaacaggagagagaggtc
ctactcaaggctgccaagagtcgcgccagacaggaggacccagaacaagctcggttgaag
gcgaaagctaaggagatgcagcaggcggagcaggcccagatccggcagcgtgaagccaac
ctcactgccctggctgccatcgggccccgcaagaaacgcaagatggactcgccagggggc
tccacatcgggcacagaggttgcttcgggttcaggggatggctcttccacagctgcctcc
tcccgccaacagctccgtcagcggatcacgcgagtcaacctcagggactttatcttctgc
ctggagcaggagagggccacatccaggtccttattgctttataaagctctcctgaagtag
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