Oncorhynchus tshawytscha (Chinook salmon): 112218840
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Entry
112218840 CDS
T05605
Name
(RefSeq) TBC1 domain family member 15
KO
K20168
TBC1 domain family member 15
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112218840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112218840
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
112218840
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
PH_RBD
Gtr1_RagA
Motif
Other DBs
NCBI-GeneID:
112218840
NCBI-ProteinID:
XP_024235815
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All DBs
Position
LG19:complement(45248816..45260560)
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AA seq
684 aa
AA seq
DB search
MSADTPPKVLFEHEGVFIHSNTEDSEDQDLLVSGFLRIIDKDGEIIVEYKPLEDTVDPSN
MLCAGKDSSSVMEWAYCPGEERSSPQQAVVLEQQQSYETEWDMINAVSFPKRKPCSNGDG
TLNHTHEKSKWSFTFSVWDLRSITVKEEGWSRLVFGLKEPPTSLPSLHFHQGGSEGFLDC
LRRYIIITEAPDDETCLLVSTPNRALSQSFENLLDDNNYGLVTKLKKDPYVTTLGGFSKV
TNYIFDAFRGPELEQQQRKPHEEVADLDILGLGEVIPGLGEVIPGLEINQQEEPGFEVIT
RMDLGARPEVTRREPLSAEDWAKHQDQEGRVENVPQLKKIIFKGGLCHAVRKEAWKFLLG
YYTWDSTYDERKGQQRRKTDEYFRMKLQWKSVSEEQERRNSRLRDCRSLIEKDVNRTDRT
NRFYEGIDNPGLVLLHDVLMTYCMYDFDLGYVQGMSDLLSPILYVMDNEVDAFWCFVSFM
DQMHQNFEEPMQGMKTQLIQLSTLLRLLDLAFWNYLESQDSGYLYFCFRWLLIRFKRELS
YPDVLRLWEVMWTGLPCQNFHLLVCCAILDSEKKKIMEENYGFNEILKHINELSMKLDIE
EILHKSEAICMQIRSCKDLPYSISEILGFNTESKFPRLEGREFGTLDSPQSPRPTQRQEV
FSNGHNRHYREPPTHNGCKVSFIS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgatactcctcccaaggtgttatttgaacatgaaggtgtattcattcactca
aatactgaagacagtgaagaccaagatctgcttgtttctgggttcctacggattattgat
aaggatggtgaaatcattgtggaatacaaacccttggaggacactgttgatccatccaac
atgctctgtgctggcaaggattccagctcagtgatggagtgggcctattgtcctggggag
gagaggtcgtcacctcagcaggccgtggtgctggagcagcagcagagctacgagaccgag
tgggacatgatcaacgcagtctcctttcccaagaggaaaccctgttccaacggagatggt
acattgaaccacacgcatgagaaaagcaagtggtccttcaccttcagtgtgtgggacttg
aggtctatcacagtgaaggaggagggctggtcccgtctggtgttcggattgaaggagcca
cccacctcactgccatccctccacttccaccaggggggcagtgaaggcttccttgactgc
ctgaggagatacatcataatcacagaggccccagatgatgaaacctgcctgctggtcagc
actcccaaccgagctctctctcagtccttcgagaaccttctggacgacaacaactacggc
cttgttactaagctgaagaaggatccctatgtgacgacgttgggcggcttctccaaggtc
accaactacatcttcgatgcgttccgcggcccagagctggagcagcagcagcggaagccc
catgaggaggtagctgacctggacatcttgggactgggagaggtcatcccgggactgggt
gaggtcatccctggcctggagatcaaccagcaggaggaacctggctttgaggttatcacc
aggatggacctgggcgccaggccagaggtaacaaggagggagccactgtctgcagaggac
tgggctaagcaccaggaccaggaaggaagggtggaaaatgtccctcaactcaagaaaatc
atattcaaaggtggcttgtgccatgcggtgaggaaagaggcctggaagtttctgctgggg
tattacacctgggacagcacctacgacgagcggaaaggccaacagaggaggaaaacggat
gagtacttcaggatgaagctccagtggaagtcggtgagtgaggagcaggaaaggagaaac
tccaggttaagagactgcaggagcctgatagagaaggacgtgaacaggacagacagaacc
aacaggttctatgaaggcatagacaacccaggcctggtgttactacatgacgtcttgatg
acgtactgcatgtatgattttgatctgggttatgttcagggtatgagtgacctcctctcc
ccaatcctctatgtgatggacaacgaggtggatgccttctggtgttttgtctccttcatg
gatcaaatgcaccaaaacttcgaagagccgatgcagggcatgaagactcagctgatccag
ctcagtactctgttgaggctgctggacctggccttctggaactacctcgagtcacaggat
tcaggttacctgtatttctgtttccggtggttactgatccgcttcaagagggagctcagt
tatccagatgtccttcgtctgtgggaggtcatgtggactggcctgccctgccaaaacttc
catctgctggtgtgctgtgccatcctagactcagagaaaaagaaaatcatggaggaaaac
tatggcttcaatgagatcctcaagcacatcaatgaactatcaatgaagctggacattgaa
gaaatccttcacaaatcagaggctatttgtatgcagatcagaagttgtaaggatttgcct
tattcaataagtgagatcctgggattcaacacagaaagcaaatttcccagattagaaggg
agggagtttggaactcttgattcccctcagtcccccagacccacacagagacaggaggtc
ttctctaatggtcacaacagacattacagagaaccccctactcacaacggctgcaaagtc
tccttcatatcatag
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