KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112218856
Entry
112218856         CDS       T05605                                 
Symbol
poc1b
Name
(RefSeq) POC1 centriolar protein homolog B
  KO
K16482  centriolar protein POC1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112218856 (poc1b)
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:otw03037]
    112218856 (poc1b)
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Centrosome formation proteins
   Centriole proteins
    112218856 (poc1b)
Cilium and associated proteins [BR:otw03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   112218856 (poc1b)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd NBCH_WD40 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_SCAP WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_IP5PC_F Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_Nup120_160 Ge1_WD40 eIF2A Beta-prop_IFT122_2nd Beta-prop_WDR75_2nd RMC1_N Cytochrom_D1 TolB_like DUF6986 THSD1_N HAT
Other DBs
NCBI-GeneID: 112218856
NCBI-ProteinID: XP_024235840
LinkDB
Position
LG19:46064698..46122628
AA seq 509 aa
MASVMEDPTLERHFKGHKDAVTCADFNSKHKQLASGSADKTLMIWNLNPKARAFRFFGHK
DVITGVQFSPAGDLVVSASQDKTVRLWTPSIKGESMVFKAHTATVRSVSFSHDGQRLVTA
SDDKSVKVWSVHRQRFVYSLNQHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSTKQCIN
CFTEYGGSATFVDFNTSGTCIASSGADNTLKIWDIRTNKLLQHYQVHSAGINCFSFHPSG
NYMISGSSDSTVKILDLLEGRLIYTLHGHKGPVLSVAFSRGGDFFASGGCDAQVLMWKTN
FDSFDYREVLSRHSQRVSPDPSPHLTDIYPRGPHLHSAQSGAIEISPMVADTQTTAPAVI
EVGQTLYTATTAINGHANNLPARRIASTSLNPNEDCHSSGQGSTSGSQSRQMGGRRGEEQ
GMTYPLEMRSDLPMNFSSTLERIVQQLDVLTQTVSVLEERLTLTEDKLKECLFNQSQILL
QVRGEEKDRRREMVEEEREGESGSPVASA
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggcatcagttatggaggaccccaccctcgagcgacacttcaagggccacaaagatgct
gtcacctgtgcagacttcaattccaaacacaaacagctggcctcagggtctgcagataag
accttgatgatttggaatctgaaccctaaggccagggcgttccgtttttttggacacaaa
gatgtcatcacaggggtccagttctcccctgcaggagatctggtcgtctctgcatcccag
gacaagactgtacggctgtggacgcccagcattaaaggagagtcgatggtgttcaaagcc
cacacggctacagtacgcagtgtcagcttttctcatgacggccagaggctagtgactgcg
tcagacgacaagtctgtcaaggtgtggagtgtccacagacaacgttttgtctactcactc
aaccagcacaccaactgggtccgctgcgccaggttttctcctgacggccgtctaattgcc
tcctgtggtgacgaccgcacagtgcgactgtgggacacctccaccaaacagtgcatcaac
tgcttcacagagtatggaggatcagcaacatttgtagacttcaacaccagtggcacctgc
atagcatcctcaggagcagacaacacgctgaagatctgggacatacggacaaacaaactg
ctccagcattaccaagtccacagtgcagggatcaattgcttttccttccacccgtctgga
aactatatgatcagtggctccagtgacagcacagtgaagatcctggacctgctggaggga
cgcctcatctacaccctccacggacacaagggtcctgtcctgtctgtggccttctccagg
ggaggagacttctttgcctcagggggttgtgatgctcaggttttaatgtggaagaccaac
tttgattcttttgactaccgtgaggtcctgagcagacacagccagcgggtcagccccgac
ccctctcctcacctgacagacatctaccctcgaggaccacacctccactccgcccagtct
ggggctatagagatcagtcccatggtggcagacacccagaccactgccccagctgtcata
gaggtgggccagaccctctacacagccactacggctatcaacggccatgcaaacaatttg
ccagcacggcggattgccagtaccagcctcaaccccaatgaagactgccacagtagtgga
cagggttcaacatctgggtcccagtccaggcagatgggaggcaggaggggggaggaacag
gggatgacgtaccctctggagatgcgctcagacctccccatgaacttcagcagcaccctg
gaacgcatcgtccagcagcttgacgtcctcactcagactgtctctgtgttggaagaacgc
ctcaccctgacggaggacaaactgaaggagtgtttattcaaccagagtcagatcctgctg
caggtgcgaggggaggagaaggaccgaagaagagagatggtggaggaagagagggaaggt
gagagcggatcccctgtcgcctcagcctaa

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