Oncorhynchus tshawytscha (Chinook salmon): 112218967
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Entry
112218967 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger homeobox protein 3-like
KO
K09378
zinc finger homeobox protein 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112218967
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
112218967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
zf-C2H2_ZFHX3
zf-C2H2
zf-C2H2_4
Homeobox_KN
zf-H2C2_5
zf-C2H2_ZNF462
Motif
Other DBs
NCBI-GeneID:
112218967
NCBI-ProteinID:
XP_042157509
LinkDB
All DBs
Position
LG19:complement(31205731..31218500)
Genome browser
AA seq
2544 aa
AA seq
DB search
MDIGEGGRGKDGGREGGEPDISTKPLSHPLLTPEVVPSKGSPSRTSAPAPAKEPSNLTQT
EQGGAEGTAGREETPEGERGIYSQNGGVTLKEEQEKEEKLNEKKEKERLLLVDDREETGR
KNLAEVSSKDRGEEEKEKEEEEEREEAISNQSQTKSKCSLLPRQSLHSSASSTVMASGTL
NSNIHITASNSPKHSTSPSTCPKLSLSPSNSPKHSTSPFTSPKRSSFFPSSPYPQNETEV
RDTGEVQGNSPCFPLSFKPQQSALSKSTSPPAKDDGRADATHTSLIANGDTTKVPKPNNN
PEVRDGDREMEIERDDGEKEREGDENIETVSKYLHSSPSSSSSPSSPVSLNSHMALMQSR
NSCKTLKCPKCNWHYKSQQTLQVHLREKHPESGGSCVCGGLGENCVCGGSRGVCLYCSTG
KAHPRLSRGESYVCGYKPYRCGVCDYATSSKGNLSIHMQSDKHLSNVQTAGQTQHAHSTH
THSTHSAGSTDRDTAGGQVYGHTHPEVTLPPENTPPYPSHPSSQGKRWRCEVCDYETSIA
RNLRIHTTSEKHTQNVLRLKHTHNVLQLQRSYYLAHCRSLPPQLTLIHSTGGEQSLDMHQ
LTAEEPVAPDSTLTPSPSPPPSSSPSPSPSPSPLLLSLSPSPPPPLSLSSPSPLYRGVFR
CLVCFSFSSDSLESLGSHLSAPRSLPQSEWRCLVAGGCYCRLCGYSTPLTANFTLHCQTD
RHRARYQLAAHLWERGEKGEAVDWEEVGKLVATGNLVQLKCNVCDFQTTSLEKLRIHSVN
SQHQASLRVYMFLEQYDSAVAGGSWSFHCVLCNYSSRSKLHLLRHTHSTGHHKREELHRL
QLVKRRSLNKGEDLAAIFSIRKCTSPEIDGSSEEGERRDSLSPAKRSFSWLEETQSPLSP
KCPRTDKHTTDQHTTAKCPLCQDTLVHIHLRRHLTLTHSVAQDCVEKLMSTVAVDLPEIL
QKETLQRDSHSSDSNTNEYQTNDSNTIVFYAKESLRNESQSNDSHMNEEEVIPAKDVPAL
PTRPCEDQHLAEDNTSHLPESPSSSPSLPTPPSPSLSHLPSSALPPSPPSDAPPSSDRHC
YRFRCGRCSLAFRTQEKLKLHWQYHAMRAATECHLCPRRCRSQEALQRHLLNTHLQDLHL
QSTYPDQIGAHIQRPTSLEGEEEEGESMSEEDEEEGNEGEEDEKDDPDEEERPSPGVSNS
DMGSGQQEAGSEPSPLIKGSNLTLDRFLDPARPYKCSVCCESFTQRTILLVHYNSVSHLH
RAKARRALHDSSPSHADTPQDLEPSPYRCSLAPDPRPYRCRMCGVAYSQSSTLDIHLRSV
LHQTRARAARAQLPLNPHTHQTPASASTQAPHTPVPSLVQTQTPASSPSPGGGEASTRGN
PPAATRPAPAPPSPCSSLSEAQLSVGVSGQVKGQQAKRRRVEDLTASAGQQDLMLLQQQL
AQAQILQQQQELAQAQIEQHTVLLQPQLFSPTLLPHLPLLQHNLLKQHLPSAAEILQHGN
LFPPLPLSPDSLFSLQQQLLLSFYLSGGLHLNPNTTLMNQTTSAVSPQTTSALSPQTTSA
VSPQTTSDQHPQIERLEPPSPQPETNGIQLPAHAPKCETQAETAGSDSPLHQTEKEFNPS
SPPEGDGEKNGDMQESEKKERAEKALRVLLERYGWELALQSTQSRQRQQNREMEGCLEEE
KQCGECGKLFSDSLILKSHQEFVHRQMIPPVVLEMFSRQYRLQYDRLYPLRPFTPGDTET
TVVAPLTPASASAPALAPLPPAPASDSTLDQAQSLAVSQTSVPALSPAATLTTIDTDPAV
PPPPASVSVTLSPDHAPVNSLFPVHARASPTPSPPPSPCQPQPLSEQDSTTTTNTPCPDP
CQAIIHKPKLSLPPLPLPQLPLPRLPLSNLSSLPFPIDPSLLPIGLMQPIALQSMLQYQS
LLSSCHQPPLSLYTNTHSAPSPALPPYTTTHSAPSPALPPYTTTHSAPSPALPPYTNTHS
APSLALPPYTTTHSASSLALPPYITTHCAPSPALPPYTTTHSAPSPALPPYTTTHSAPCP
ALPPYTTTHSAPSPALPPYTTTHSAPSPALPPYTTTHSAPSPALPPYTTTHSAPSPALPP
YTTTHSAPSPALPPYTTTHSAPSPALPPYTTTQTTPSPALPPYTTTHSAPSPALPPYTTT
HSAPSPALPPYTTTHSALSPALPSLKRRLEEGTEVRPMSDVMAGDGEEGGEREGEGDEQR
RDRRQRTTISAEQLEVLYQRYSLNSNPTRSALEGITRDTGLKKRVVQVWFQNTRARQRKG
QLQTLGRGGLGVGLGDNHRRCPFCRALFKAQSALDAHVRARHWSQTDRPAYGLSHQIGSA
DDFSFSHNHGSYRDREGPPLSLQHSPSLSHHPSLPTSLHPSLSPGVIPTERKYISGKTDL
TFDLNEPDLEEEEEEEGLSVKIFPSSDQAHEGNDSNLLSLGYKYGMASFNVQDCDQNSSP
SLSESVDRHGPRQQQQQRQRTQMTPQQVAKLRACYREHPTPSPMQCEGLGRQLGLPRRVV
QVWFQNGRAKEKRARSLRVDPTTG
NT seq
7635 nt
NT seq
+upstream
nt +downstream
nt
atggacatcggtgagggagggagaggaaaggatggagggagagagggaggagaacctgac
atcagcaccaagccgttatctcatcctctcctgaccccggaagtggttccttctaagggg
tcgccctctcgtacctcagccccggcccctgccaaagagccctccaacctgacccagaca
gagcaggggggtgcagaggggaccgcaggcagagaggagaccccagaaggggagcggggt
atatactcacagaatggtggtgtgacactgaaagaagagcaagagaaggaagagaagcta
aatgagaagaaggagaaagaaagattgttactggtggacgacagagaggaaacgggaaga
aaaaaccttgcagaggtcagcagcaaagacagaggagaagaggaaaaagagaaggaagag
gaagaggagagagaagaggccatctcaaaccaaagccaaaccaaatccaaatgtagtcta
ttacctcgacagagcctgcacagctctgcttccagcactgttatggccagtggcacattg
aacagcaacatccacatcactgcttccaattctccaaagcactctacctctccttctacc
tgtccaaagctctcattatcaccttccaattctccaaagcactctacctctcctttcacc
tctccaaagcgctccagctttttcccctcctctccttatcctcagaatgagacagaggtg
agagacacaggagaagtgcaaggcaatagtccttgttttcctctgagctttaaaccccag
cagtctgctctgtctaagtccaccagcccacccgctaaggatgatggtagggcagacgcc
actcacacttcccttattgccaatggagacaccaccaaagttccaaaaccaaacaacaac
ccagaagtgagagatggagatagagagatggaaatagaaagagatgatggagagaaggaa
cgagagggagatgagaacatagagactgtatctaagtacctccactcctctccctcctct
tcctcctcaccctcctctcccgtctcactgaacagtcacatggcattgatgcagtcccgg
aactcctgcaagacacttaaatgccccaaatgtaactggcattacaaatcccagcagaca
ctgcaagtccacctcagagaaaaacacccagagtctggaggctcatgtgtgtgtgggggc
ttgggggagaattgtgtttgtggagggtcaaggggtgtgtgtctgtactgtagcacaggg
aaggcccatcctcgtctatcccgaggggagagttatgtctgtgggtacaagccctatcgc
tgtggtgtgtgtgattacgccacgtcctctaaaggaaacctcagcatacacatgcagtca
gacaaacacctcagcaacgtacagacagcgggacaaacacaacatgcgcacagcacacac
acacactccacacacagcgcgggctccactgacagagacacggcaggcggtcaggtgtac
ggacacacacaccccgaagtcacgctgccccctgaaaacacaccgccctaccccagccat
ccctcctcccagggtaagaggtggcggtgtgaggtgtgtgattatgagaccagcattgcg
cggaacctgcgcatacacaccaccagcgagaaacacacacaaaatgtgctgcgcctgaaa
cacacacacaacgtactgcagctgcagagaagctactacctggcccactgcaggagtctg
cctcctcaactcacactgatacacagcacaggtggggagcagtctttggatatgcatcaa
ctaacagcagaggagccagttgccccagattcaaccctgaccccctccccctctcctcct
ccctcctcctcaccatccccttctccatccccctctccccttctactgtctctctccccc
tctccccctcctcccctgtctctctcctccccatctcccctctaccgtggtgtgttccgg
tgcctggtgtgtttcagtttctcctctgacagtctggagtctcttgggtctcacctgagt
gccccccgctccctgccccagtctgagtggcgttgtctggtggccggaggctgctattgc
aggctgtgtggctacagcacccccctcacagctaacttcaccttgcactgccagacagac
agacacagggcccgctaccagctggctgcccacctctgggagagaggggagaagggggag
gctgtggactgggaggaagttgggaagttggttgctacaggcaacctggtccagctgaag
tgtaacgtgtgtgacttccagaccaccagtttggagaaactgagaatacacagcgtcaac
tcccaacaccaggccagcctcagagtctacatgttcttagagcagtatgacagtgcagta
gctggaggctcctggtcgttccactgtgtcttgtgtaattactcctcccgctctaaactc
cacctactgagacacacccactccacgggtcatcataagagggaggagcttcaccgcttg
cagcttgtgaaaaggaggagcctgaataaaggagaggatctagctgccatcttcagcatc
aggaagtgtaccagtcctgagatagatggaagcagtgaggagggggagaggagagattcc
ttatccccagccaagcgatcattctcttggctggaggagacacagagccctctctctccc
aaatgccccagaaccgacaagcacaccactgaccaacatactactgccaagtgcccactg
tgccaggacacactggtacacatacacctgagacgtcacctcacactcactcatagtgtg
gcccaggactgtgtggagaagctcatgagcactgtggcagtggatctgccagagattcta
cagaaagagacactgcagagggattcccattcaagcgactccaacacaaacgaatatcaa
acaaacgattccaacacaatcgtcttttacgcaaaggagtccctcagaaatgagtctcaa
tcaaacgactcccatatgaatgaagaagaagtgataccagccaaagatgtccctgctctg
cccacccgtccttgtgaggaccagcatctagcagaggacaacacctctcacctcccagag
tcccccagctcttccccctccctccccactcctccctctccctccctcagccacctccct
tcatccgccttacctccctctcctcccagcgatgcccctccttcctctgatcgtcattgt
tacaggttccgctgtggcaggtgcagtctagcattccggacacaggagaagctgaaactg
cactggcagtaccatgccatgagggcggcgacagagtgccacctctgccccagacgctgc
cgcagccaagaggccctgcagagacacctgctcaacacacacctacaggatctacaccta
cagagtacataccctgaccagattggagcacacatccaacgaccaaccagcctggagggg
gaggaagaggagggggagagtatgagtgaagaagatgaggaggagggaaatgaaggagag
gaggatgaaaaggatgacccagatgaggaggagaggcccagtccaggggttagtaatagt
gacatgggttcagggcagcaggaggcagggtcagaacccagccccctcatcaagggctcg
aacttgactctggaccggttcctggacccggctcggccctacaagtgttcagtctgctgt
gagtccttcactcagagaaccatcctgctggtccactataactctgtgtcccacctccac
cgagccaaagccagacgggccctgcatgactccagccccagtcatgctgacaccccccag
gacctggaaccaagcccctaccgctgcagcctggcccctgacccaaggccctaccgctgc
aggatgtgtggggtggcctacagccagagctccaccctggacatccacctccgttctgta
ctgcaccagacacgagcccgtgcagctcgggcccagctaccactgaacccccacacccac
caaactccagcctcagcctcaacccaggctccccacaccccagtcccatccttggtccaa
actcagacccctgcctccagcccttcgcctggaggaggagaggcatctaccaggggaaac
cccccagcagccaccagaccagcccctgcccccccaagtccctgttcctccctgagtgaa
gcccagctgagtgtgggtgtctctgggcaggttaagggtcaacaggctaagaggaggaga
gtagaggacctgaccgcttccgcaggacagcaggacctgatgttactccaacagcaatta
gcccaggcccagatactacagcagcaacaggagttagcccaagcccagatagagcaacac
acagtcctcctccagccccagctctttagtccaacactgctcccacacctccccttactg
caacataacctcctaaagcagcacctcccttcagcagcagagattctccaacacgggaac
ctcttccctcccctccccttatccccagacagcctattctctctacagcagcagctgctc
ctgtccttctacctttctggagggttgcatctcaaccccaacacaacccttatgaaccag
accacctcagctgtctcccctcagaccacctcagctctctcccctcagaccacctcagct
gtctcccctcagaccacctcggaccaacacccccagatagagaggcttgaacctccctct
ccacagccagagacgaatggaatccagcttccagcccatgccccgaaatgtgaaacccag
gctgagaccgctggcagtgactcccccctccaccagacagagaaagagttcaacccatcc
tcccctcctgagggagatggagagaagaatggagatatgcaggagagtgagaagaaggag
agagcagagaaggccctcagagttctgttggaaagatacggctgggagctggccctacaa
agcactcagagcagacagagacagcagaacagagagatggagggatgcctggaggaggag
aagcaatgtggagaatgtgggaagctgttctctgactctctgatcctgaagagccaccag
gagtttgttcaccgccagatgatccctcctgtagtgttggagatgttctccagacagtac
aggctgcagtacgaccgcctctaccccctcagacccttcacaccgggggacactgagact
actgttgttgcacccctaaccccagcttcagcttcagcacctgcacttgcacctttaccc
ccagcaccagcctcagattcaaccctcgaccaagcccaatccctcgctgtctcccaaacc
tcagtcccagccctttccccagctgcaaccctaacaaccatagacacagacccagctgtg
cccccaccaccagcatccgtatctgtaaccctgtccccagaccatgccccagttaattcc
ctcttcccagttcatgccagagcctcaccaacaccctctcctcctccatccccctgccaa
ccacaaccactttcagagcaggacagtaccacaacgacaaacaccccttgccctgacccc
tgtcaagctatcatacacaagcccaaactctccttaccccctctccccttaccccaactc
cccctgccccgtcttcctttatccaacctctcctctctgcccttccccatagacccctct
ctcctccccattggtctaatgcagcccatagccctccagtcaatgcttcagtaccagtcc
ctgttatcgtcctgccaccaaccacccttatccctatacaccaacacccactctgctcct
agcccagctctacccccatacactaccactcactctgctcctagcccagctctaccccca
tacactaccacccactctgctcctagcccagctctacccccatacactaacacccactct
gctcctagcctagccctgcccccatacactaccacccactctgcttctagcctagccctg
cccccatatattaccacccactgtgctcctagcccagccctgcccccatacactaccacc
cactctgctcctagcccagccctgcccccatacactaccacccactctgctccttgccca
gctctacccccatacactaccacccactctgctcctagcccagccctgcccccatacact
accacacactctgctcctagcccagccctgcccccatacactaccacacactctgctcct
agcccagccctgcccccatacactaccacacactctgctcctagcccagccctgccccca
tacactaccacccactctgctcctagcccagccctgcccccatacactaccacccactct
gctcctagcccagccctgcccccatacactaccacccaaactactcctagcccagccctg
cccccatacactaccacccactctgctcctagcccagctctgcccccatacactaccacc
cactctgctcctagcccagccctgcccccatacactaccacccactctgctcttagccca
gccctgccctctctgaagcgtaggctggaggaagggacagaggttaggcctatgagtgat
gtgatggccggtgatggagaggaagggggagagagggaaggagagggggatgagcagagg
agggataggcgccagaggaccaccatcagtgcagagcagctagaggttctataccagcgc
tacagtctgaactccaacccaacccgctctgcactggaggggatcaccagggacacaggg
ctgaagaaacgtgtggtgcaggtatggttccagaacactagggctcgtcagaggaagggc
cagctccagaccctggggagaggaggtttaggtgtgggtctgggtgacaaccacaggcgc
tgtccattctgtagggctttgttcaaggctcaaagtgccctggacgcccatgttagggcc
cgccactggtcccagactgacagacctgcctatggcctgtctcatcagataggttccgct
gatgacttcagcttttctcacaaccatggatcctacagagacagggagggtcccccactc
tccctccagcattctccctctctctcccaccatccttctctccctacctccctccatccc
tctctaagccccggggtcatccccactgagagaaaatacatttctgggaaaacagatttg
acctttgacctgaacgaacccgacttggaagaggaggaagaggaagaaggtctgtcagta
aaaatattcccttcgtctgaccaggctcatgagggtaacgatagcaatctgttgtctctg
ggatacaaatatgggatggcaagcttcaacgttcaagactgtgaccagaattccagtcca
agtctgtctgagagtgtggataggcatggaccgagacagcagcagcagcagaggcagcgt
acacagatgaccccccagcaggtggccaagctcagagcctgttacagggagcaccccacc
cccagcccaatgcagtgtgagggcctgggacggcagctggggctcccacgcagggtggtg
caggtgtggtttcagaatggccgggccaaggagaagagggcaaggagcctcagagttgac
cccaccacaggatag
DBGET
integrated database retrieval system
