Oncorhynchus tshawytscha (Chinook salmon): 112219000
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Entry
112219000 CDS
T05605
Name
(RefSeq) neural-cadherin-like
KO
K27892
neural-cadherin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112219000
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Cadherin related
112219000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
Cadherin_CELSR2_9th
Cadherin_pro
Big_9
EGF
hEGF
EGF_Hmr-1
EGF_Teneurin
cEGF
EGF_2
Motif
Other DBs
NCBI-GeneID:
112219000
NCBI-ProteinID:
XP_042157108
LinkDB
All DBs
Position
LG19:38939691..39040425
Genome browser
AA seq
2661 aa
AA seq
DB search
MNLSPARFQAASFELVYPETDITPINVGKESGHIVVARRLDRETEPFVEFTVKIQDQQGP
DWYLTKVKLMVTDVNDNVPEWAMEPYPYLAVVSSEAPPGVLVYLLHARDGDEGSNGEVDY
FLADGGDGCFAVDKKSGHVLTTGLPLQRDRVYLLSVVAFDRLGSRSAPAMVSVIAGPRAP
QFTNTSYVISIPENTPEGQSFLVVLAISFQKQPISYSLLINPSSLFSMQQETGEISLTRT
LDYENDQRRYLLMVRASEGPGGLSSAIEVQVVITDENDCVPEFLQSIYSVDGVSETVTTA
TSLLQVLASDCDSGLNAELTYYTLSPDFSISPHGTIFPAGRLDYERPNHLYEFVVMAVDN
GEEPHSGTATIRIRMANINDQAPEFSQTVYRTFVSEDAGPNTLVATVLAKDPDGDGIVYS
ITAGNEEGNFVIDSQKGLIRLRFTPAPKLQGLEYVLNVTATDDNASGGPHPLSAIAWVIV
GVDDVNNNKPVFEKCQQYREQASVLENQPTGTFVLQVHAVDADEGANGKVKYGLMHRDSA
IPAFRVHPDTGVIVTARRFDRERQREYSITVTATDWAEEPLIGICQLNVIILDQNDNSPK
FENLRYEYFLREDTMIGTSFLRVAAHDDDFGTNAAVTYSISQEQPEYLRVNPVTGWVYVN
QPISQRSYITREIMATDGGNRSTFVEMSVTITNVKNQPPQWEKDSYSVVIPENTARDTPI
VTIKATSLLGDPRVTYNLEEGVVPETNMPVRFYLSPNREDGSASILVSEPLDYETTPSFS
LRVRAQNLAAVPLAAFTTVYVNVTDVNDNVPFFTSSIYEASVTEGAKVGTMVLQVSAQDK
DLASNGQITYSLLSDSSGDHRLFRVDPELGSIYTEAVFDREAQGSYLLEVQSEDGMESAR
PGRNKQPNSDTAYVRVFISDVNDNKPVFAQRLYEVGVDEDADVGLAVVTVSANDEDEGAN
AKLRYQITSGNTGGVFDMEPEVGTIFVAQPLDYEQQKRYKLLVLASDGKWEDYAAVVVNV
VNKNDEAPVFSMNEYYGSVTEELDGSPVFVLQVTATDPDKDADQDAVRYSLHGQGADSQF
MINENTGEMYAQKTLDREERAVWRFVVLATDEKGEGLTGFTDVIINVWDINDNEPAFTCA
PDGCHGNVAENSPPGSFVMEMTAADLDDTAVGQNAILTYRIIKNARDADSEELFTIDTST
GTISVVTGGLDREVAERHQLVVEARDGGDMVGTATATIIIMDLNDHTPRFKDEWCGARVS
ESSPPDSTVLELEAVDPDSGPHGLLGFSVVAGDQWERFYMVSHRAEQSGSLKLRKGLDYE
RPGEQRFNLTIQVEDSDFSSLIHCIIQVLDENDHIPEFTTTFYPLAPLVEDVAVGTSITQ
VVANDSDSDLNGEIVYSISPESDPYGNFIVDRDGIVTVTRPLDRETMPEYQLVVMATDRG
SLALTGSATVQLSLLDVNDNGPELEVAYTPVLWENSPAPQLVWLNQTSTLLHVIDRDSPE
NGPPFSLALPRLYAPDFHLQDHGNGTATLTALRRFDRERQREFLLPVVMTDSGRPPMTVT
NTLTITVGDQNDNAHQEGEKEIYFHSRRGRMQTTSLGKVYAPDQDDWDNKTYTLDAGGMR
YFTLNRSSGHLAIRQNTLAGSYYLRVGVSDGVWPDVVSGVTVHVRELEDMAIHSSASLRL
TGITAREFIESRVDERSRQDMFRSFLSEHLSIRSGTINVFSLTDVRPKTLDVRFSVHSDG
YLRPEKLHGYLAAHRKKLQSLLRVNVSQVEVDECVYTDCRPGGGCSTQLSVSDTPTLVDA
GNIALVSVTMMSSARCGCSARDRVHQACSSYLTNPCFNGGTCMDTLSGYRCQCPPQHEGP
ECQQTRRRFLGNGYAWFPPIRPCFDSHLSLEFITEAEDGLLLYSGPLATLQPGDPEDYMA
IELIGGTPSLKINHGSGTLVLQLQGNMVVSDKRWHRLDVRSNSKDVHFTLDRCSSAIVME
TEGVDSWAMTEDRSSCEVRGVTPNRDRYLNVSQVLQLGGVNENMSYEYPQLQQKHFNGCL
RNLVVDSKLYDLGSPSASSSTAPGCSLTDGNCMNMGVPVCGARGHCNGKWDSFSCQCGPG
YTGIHCEDEVPEFSFNGRSHVQYQVGWSLPARHSSFQLQVRTHTPSGVLLSLLSQEQNEY
LRLEMFQGLLAVFYNLGDRPYNLTLPFHRLDNGEWHEVELDRHGKEFTLQLDGGGGRREV
TAAPGRSQEIVIDQSVVMLGNSFPSGHNRSFLGCLRDLRLNGRPMPIAKQPSVGSEGLQV
VTSQGVSPGCPSDACRKHQCSPPFICMDLWRKHECRCPPGHMMKKNASGKVCVYTLCASR
PCRHGTCVAHSPSKYSCHCSEGYRGLHCEVSLALYHNDDSNTLSLSSAFAISICVLAFLV
LMLGLFLYSCWRRHKGLKESVYHVSAHHGEWEDIRENVLNYDEEGGGEQDQNVFNMVELQ
RSLQPSPAQSLRYSYPQCIISYPQTTKPPDTKNGTKPKGSNEPRIGSTVIALRLAHPPSG
SATLPSPLTMRQSHKSLSFSSQDLARYLCEIIRDTDHPLGDNPGFMTSQRRLSNRGQHGG
LVVRSLSSLNAGGQGSEVRGQGSQESLERQRAQSPLLDRLKALRAVVSELRVDAAVDCCH
QEHRGTEGQSEGEGDQGAAQL
NT seq
7986 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgagcccagccaggtttcaggcagcctcatttgagctggtttacccggagaca
gatatcaccccaatcaacgtgggcaaggagagtggacatatcgtggtagccaggcgcctg
gacagggagactgaaccgttcgtggaatttactgtcaaaatacaagatcaacaagggcct
gactggtacctgaccaaggtgaagctgatggtgacagatgtcaacgacaatgtccccgag
tgggctatggagccatacccctacctggccgtggtgtcctccgaggccccccctggggtg
ctggtttacctgctccatgcccgcgacggggatgagggcagcaatggcgaggtggattac
tttctggccgatggtggtgatggctgctttgcagtggacaagaagagtggtcacgtcctg
accacgggtctccccctgcagagagacagggtgtatctgctgagtgtggtggcctttgac
aggctgggaagccgcagtgctccggccatggtgtcggtcatagcaggacccagagcacca
cagttcaccaacacgtcctacgttatctccataccagagaacaccccagagggacagtcc
ttcctggtggtgttggccatctccttccagaagcagccaatcagctacagcctgctgatc
aaccccagcagcctgttcagcatgcagcaggagacgggggagatcagcctgacccgcacg
ctggactatgagaatgaccagagacgatacctcctcatggtcagggccagtgagggtcca
gggggcctcagcagcgccatcgaagtccaggtggtgataacggatgagaacgactgtgtc
ccagaatttctccagtccatttacagtgttgatggagtctctgagacagtcaccacagca
acctctctcctccaagtgttagccagtgactgtgactctgggttgaatgcggagctcacc
tattacactctaagcccagacttcagcatttctccccacggaaccatcttccctgcgggc
cgtctggactacgagaggcccaaccacctgtatgagtttgtggtgatggctgtggataac
ggggaggagcctcactcgggcaccgccaccatccgcatccgcatggccaacatcaacgac
caggccccagagttctcccagactgtctatcggacctttgtctctgaggatgcaggcccc
aacactctcgttgccacggtactggctaaggacccggatggtgatggaatagtgtactca
attacagctggcaacgaggagggcaactttgtcatcgacagccagaaagggttgatccgt
ctgcgcttcacccccgctcccaagctccagggcctggagtacgtcctcaatgtaacagct
acagacgacaacgcctccggggggccacacccactctctgccatcgcctgggtcatagtg
ggcgttgatgatgtcaacaacaacaaacccgtctttgagaagtgtcagcagtacagggag
caggcgtccgtgttggagaaccagcccacaggaaccttcgtattacaagtgcacgcggtg
gatgcagacgagggggccaatgggaaggtcaagtacggcctgatgcacagagacagcgcc
atacctgccttcagagtccaccctgacacaggtgtgatcgtgacagcgcggcggttcgac
cgggagcgtcagagagagtactccatcacggtgacggctacagactgggctgaggagccc
cttatagggatctgtcagctcaacgtcatcatcctggaccagaatgacaacagccccaag
tttgagaacctccgctacgagtattttctgagagaggacacaatgatcggcaccagtttc
ctgcgtgtggcggcacatgacgacgactttggtaccaacgctgccgtcacctactccata
tcccaggagcagcctgagtacctgagggtcaaccctgttaccggctgggtgtacgtcaac
cagcccatatcacagaggtcctacattacccgggagattatggccacagacggggggaac
cgcagcacatttgtagagatgtctgtgaccattaccaatgtgaagaaccagcccccgcag
tgggaaaaggacagctacagcgtggtcatcccagagaacactgccagggatactcccatt
gtgacgatcaaagcaacctcgttgctaggcgaccccagggtgacctataacctggaggag
ggtgtggtcccggagactaacatgcccgtgcgcttctacctgtcgcccaatcgcgaggat
ggctcagcctccatcctggtttcggagccgctggactacgagaccacgcccagtttctcc
ctgagggtgcgggctcagaacttagcagcggtaccactggctgcattcaccaccgtctat
gtcaatgtcacagatgtgaacgacaatgttccattcttcacctcctccatctatgaggct
tcagtgacggagggagccaaggtggggaccatggtcctccaggtgtctgctcaagacaag
gacctggcttccaatggacagatcacttactccctcttgagtgacagtagtggggaccac
cgtctatttcgtgtagatccagagctgggctccatttatacagaggctgtgtttgaccgc
gaggcgcagggatcctacctactggaggttcagtctgaagacggcatggagtcagcacgg
cctgggaggaacaaacagcccaactctgacacagcatatgtgcgggttttcatcagcgac
gtgaacgataacaaacccgtctttgctcagcgcctctatgaagttggggttgacgaggat
gcagatgtcggcctggctgttgtcactgtcagtgctaatgacgaagatgaaggtgccaat
gccaagttgcgctaccagataacttcgggcaacacagggggggtgtttgacatggagcct
gaggtgggaaccatctttgtcgcccagcctctggactacgagcagcagaagaggtacaag
ctgctggtgctggcatcggacgggaagtgggaggactacgccgccgtggtggtcaacgtg
gtcaacaagaatgacgaggcgcccgtcttctccatgaatgagtactatggctcagtgaca
gaggagctagatggctcaccggtctttgtgctccaggtgacggccacggacccagacaag
gatgcagaccaggacgccgtccgctactctctccatggtcagggggcggactctcagttt
atgattaatgagaacacgggggagatgtacgcccagaagacgctggaccgcgaggagcgg
gctgtgtggcgtttcgtggtcctggccacggacgagaaaggggaggggctcaccggcttc
actgacgtcatcatcaacgtgtgggacatcaatgacaacgagcccgctttcacctgcgca
cccgatggctgccacggcaacgtagccgagaactcacccccaggaagttttgtcatggag
atgacggcggcagaccttgacgacacggcagtgggtcagaacgccatcctcacctatcgt
atcatcaagaacgcccgtgacgcggattctgaggaactatttacaatcgacactagtacg
ggcaccatctccgtggtgaccggcgggctggacagggaggtggcagagcggcaccagctg
gtggtcgaagccagggatggaggggacatggtgggtacagctaccgccactatcatcatc
atggacctgaacgaccatacccctcggttcaaagatgagtggtgtggggctcgtgtgtct
gagagcagccctccagactcaaccgtgctggagctggaagctgtggacccagactctggc
cctcacggcctgctgggcttcagtgtggtggcgggggaccagtgggagaggttctacatg
gtgagccacagagcagagcagtctgggagtctgaagctgaggaaggggctggactatgag
aggcccggagagcagcgcttcaacctcaccatccaggtggaggactctgacttctccagc
ctcatccactgcatcatccaggtgctggatgagaacgaccacatccctgagttcaccacc
accttctaccccctcgctcctctagtggaggatgttgccgtgggaaccagcatcacccag
gtggtggccaatgactcagactctgacctgaatggggaaatagtctacagcatctccccg
gagtcagacccgtacggtaattttatagtggaccgagacggcattgtgaccgtgacccgc
ccgctggacagagagacaatgcccgagtaccagctggttgtcatggcgacagaccgtggg
agtctggcgttgacggggagcgccacggtccagctgagcctgcttgatgttaatgacaat
gggccagagctggaggtggcctacacccctgtcctctgggagaacagccctgctccacag
ctggtgtggctcaaccagacctccacgctgctccacgttatcgacagggactccccagag
aatgggcctcccttctccctcgcccttccccgtctttacgcccccgacttccacctgcag
gaccatggcaatggcacggcaacgctcacagcgctgcgccgcttcgaccgtgagcgccag
agggagttcctcctgcccgtggtcatgacggacagcggccgtccgccaatgacggtcacc
aacacgctcaccatcaccgtgggcgaccagaatgacaacgcccaccaggagggagagaag
gagatttactttcacagccggaggggaaggatgcagactacttcgctgggcaaggtctat
gcccctgatcaagatgattgggacaacaagacctacaccttagacgcaggaggaatgagg
tatttcactctaaacaggagttcaggccacctggccatcagacagaacaccctagcaggg
agctactatctcagagtgggagtgtcggacggggtgtggccagacgtggtgtctggggtc
acagttcacgtccgggagctagaggacatggccatccactcgtcagcctccctgcgtctg
accggcatcactgccagagagtttattgagtcccgggtggacgagaggagtcgacaggat
atgttcaggagcttcctgtctgaacacctgtccatcagatccggcacaatcaacgtcttc
agcctgacagacgttagaccgaagacgctggacgtgcgcttctctgtgcacagcgatggc
tacctgcgtccagagaaactacacggatacctggcggcgcatagaaagaagctgcagtct
ctactgcgggtgaacgtgtcccaagtagaggtggatgagtgtgtgtacacagactgcagg
ccgggtggcggctgctccacacagctcagcgtcagtgacacacccaccctggtcgatgcc
gggaacatagcactggtgtctgtgacgatgatgtcctctgcccggtgtggctgctctgcc
agggaccgggtccatcaagcttgttcctcctacctcacaaacccctgcttcaatggaggc
acctgcatggataccctcagtgggtacaggtgccagtgcccaccgcagcatgagggtcct
gaatgccagcagacaaggcgacgtttccttggcaacggctatgcctggtttcctcccata
aggccgtgctttgatagccatctttccctggagttcatcacagaggctgaggatggcctg
ctactctacagcgggcccctggccaccctgcagcctggagacccagaagactacatggct
atagagctgattggtggaacacccagtctgaagatcaaccacgggtctgggaccctggtc
ctgcagttgcagggcaacatggttgtgtctgacaaacgctggcaccgactggatgttaga
agcaacagtaaagatgtgcatttcaccttggaccgctgctccagtgctatcgttatggaa
actgagggtgtggacagctgggccatgactgaggaccgctcctcctgtgaggtcagagga
gtcacgcctaatagggacaggtacctgaatgtgagtcaggtgttgcagctaggtggggtc
aacgagaacatgtcatatgagtatccccagctacagcaaaagcacttcaatggttgtctg
cgcaacctggttgtggacagtaagctctatgaccttggctctccctcggcatcctccagc
actgccccaggctgctctctgactgatgggaactgtatgaacatgggtgtaccagtctgt
ggcgccagggggcactgtaatgggaagtgggactccttcagctgccagtgtgggcccggg
tacacagggatccactgtgaagatgaagttccagagttttccttcaatgggaggagccat
gtccaatatcaggtgggctggtcactccccgctcgtcactccagctttcagctccaggtg
cgaacccacacccccagcggtgtcctcctcagcctcctctcgcaggagcagaatgaatac
ttacgtctggagatgtttcaggggctactggctgtcttttacaacctgggtgacagaccc
tacaacctcacgctgcccttccatcgccttgacaatggagaatggcatgaggtggagctt
gatcgtcatggcaaagagttcacccttcaattggacggtggcggtggaaggcgggaggtt
acggccgctcctgggcggagtcaggagatagtcatcgaccaatcagtggtgatgctggga
aactccttcccctcaggacacaaccgcagcttcctaggatgtctgcgagacctaaggctg
aatgggcggcccatgcccattgccaagcagccctctgtggggtctgaggggctccaggtg
gtcacttctcaaggggtctccccaggctgcccctccgatgcctgcaggaaacaccagtgc
tctccccccttcatctgcatggacctctggaggaaacacgagtgcaggtgcccccctggt
cacatgatgaagaagaatgcctcgggcaaggtctgcgtctacacgctgtgcgccagcagg
ccctgtcgccatggcacctgtgtggcccactctccctccaagtactcgtgtcactgctcg
gagggctatcgcgggctccactgtgaggtctctctggcactgtaccacaacgacgacagc
aacacgctgagcctcagctctgcgtttgccatcagtatctgtgtcctggccttcctagtg
ctgatgctgggcctgttcctctactcctgctggaggagacacaagggcctgaaggagagc
gtctaccacgtatcagcacaccacggagaatgggaggacatccgagagaacgtgctcaac
tatgatgaggagggcggaggggagcaggaccagaatgtcttcaacatggtggagttacag
aggtctctgcagcccagcccagcccagtcactgagatacagctacccacaatgcataatc
tcctaccctcagacgaccaagccaccggacaccaagaatgggaccaaaccaaaaggatca
aacgaacccagaatcggcagcacggtgatcgccctgcgtctggcccaccctccgtccggg
tctgctaccctcccctctcccctcaccatgcggcaatcccataagtccctgtccttctcc
agtcaggatctggcccgctacctgtgtgagatcataagggacacggaccatcccctgggg
gacaaccctggcttcatgacctcacagcgtcgcctgtccaatagggggcagcatggtggt
ctagtcgtgcgctcacttagctccctcaatgctggaggtcaggggtcagaggttaggggt
caggggagtcaggagagcctggagcgtcagagagcccagagcccactgctggacaggctc
aaagccctgcgagctgtagtcagtgagctcagagtggacgctgctgtagactgctgccac
caagagcacagagggacagaaggacaaagtgaaggagagggagaccagggggcagcccaa
ttgtga
DBGET
integrated database retrieval system
