Oncorhynchus tshawytscha (Chinook salmon): 112219015
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Entry
112219015 CDS
T05605
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112219015 (tdrd12)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
112219015 (tdrd12)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112219015 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
MCPVI
Motif
Other DBs
NCBI-GeneID:
112219015
NCBI-ProteinID:
XP_042157662
LinkDB
All DBs
Position
LG19:44622324..44650343
Genome browser
AA seq
1539 aa
AA seq
DB search
MLEINLLKVENPSCLWGRFVKGPGIEAVENKKEYDDLQMKMNLFYHEVNLHVQKIKLSTI
ESGQVCVVYWSALRSWCRAIVESLFLGTVGTQAMCFLVDHGERVIVSSDEIRALLDTFLQ
LPFWVRKFQLAGVHPMTLHVSGDCLEKAELIPSTQWDSSATRYLHNLLQASTEMEAVLCE
TQADCTAIELYLTVKNVKICVNDDLVSKKFAYFTSQKAHQTSGKNGVVDRSPAVLACDIF
SETQNFLATDGCTARSLSDFRLRQQDPIVHNQVSDQYQLMASVKEASKTSNEISNPKKSP
ENGRNPLEGGKKKAAQPQNKKFKTFSEIDGDEVERDDEPGEETDMSLDSELFRNLNLLRF
KKFLNPSSSTQRAAIPNTELIEQEEERGVQRISAVTEKAEEEPVTAPQQIGQQTEMAVCT
PSDLVDRTQEFVFTEQPTIEEELVCARLLQLLNPDPLNTDVGSSEVTIVHTDPSRSGIMV
HSAFTLDPCTSLANAPITDTFRRILMRNKYAGPSVAESYCWPAVARGCDTVLISHSGDQP
LTYIPPFLAHMQLSSVFSALSARTGPIAVILCPGWEKAQTVIDLLEESQTFQVLHPMVIL
LGLGKDEAKTVKIQNNCQVVVTTPFSLVRLLRLHCFLFLRLCHLALDEVDLLFSRAPDEM
TIILQHFQRVTASEERVSCPRQIIAVGKRWSRPLEGLILNHMSNPTVVVTVMEEAALYGN
VHQIILLCLDCTKISVLLGALDFTPDVAQKTLVITNSAEEAENVFKAVSNTSAFSLKVHE
ELTYQFDFVTEQWKKPIGPGTHVILVTTNECMKSLGICDATCVVHYGFPSSPKLFGSRLF
CMSQNFQNLSDKERAAESTSHPAKSVLLLSERNARHVIGVLRYLKRTEASLPPELLHFAQ
GVLRAKEEQKSDKPLCRYLKSFGFCRDSSVCSYRHSISPITDQPLQPDSGTIVVLPLFIK
TASVYYGRIVSKKEDRYESLAAAMTTYYAAEKLGAKEVLEGGLYGVQEDEVYHRVRVTLV
PDKREWMFCSVRALFLDEGREQEVKSHQLLQLPAQFHTLPPQALEIIVCRAMPIDAEVKW
NPKVTRAISQKIKGLQHQAKVVLCLGNTVFVDPMVRMTRLPGLKTFINEYNVHAEILSTG
MGTSNPQHLDLLNELCQWAGPGASAGDAPLTTVPDGSGVTLEDKVQAAEEALVHRMRAGV
ERLHCGQEVSVDQPQTQTSVLHAQTDLSQCHMKASADLHQMDQKVFAHAPQPRMNDVFIY
PSQLSPKPQEAPFAAVPDPSEAQLPTLMGRTQIPSPLPTPSEAQIFAPLPTPSEAQIFAP
LPSTSEPQLPAPTTEHNDPKMEQWRSLIANLQGATQTRRHTALQGFTPKDWISAVPRPIE
NGHLIDEKQVNGEKVISVVKVDVDAPKSFHPQIKWFQRDDTVTLNIKLREPVDQRCEFFP
DRVVYSACVNDRPYRADLELHSNITAERCSWEMKCNEPVIRLVKQERGDWKMLLKQKSAF
VSLDFDRFEEDEKKTSNGLCFVGHTGEEGCYVSSDSSSD
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaaataaatttgttgaaagtggagaacccgtcctgtctgtggggtcggtttgtg
aagggtccagggatagaagcggtcgagaataaaaaagaatatgatgatctgcaaatgaaa
atgaaccttttctatcatgaggtcaacctacatgtgcagaagatcaaactctcaactata
gagtcgggacaggtgtgtgtggtgtactggtctgccctaaggagctggtgccgagccatc
gttgagtctctttttctgggcaccgttggaacccaggccatgtgtttcctagttgaccac
ggagagcgcgtcatcgtcagctcagatgagattcgggctctgttagatacgtttttgcag
ctgcccttctgggtgaggaagtttcagctcgctggtgttcatcccatgacgctgcacgtg
tctggagactgcctggagaaagctgagctcataccatcaacgcaatgggacagctctgcc
acacgctatttgcacaatctcttacaagcttctactgagatggaggcagtgttgtgtgaa
acacaggcagattgcactgccattgagctctacttgaccgtcaaaaatgtcaagatctgt
gtgaacgacgatctggtctcaaagaagtttgcgtacttcacaagccagaaggcccatcaa
accagtggaaaaaatggtgttgttgatagatccccagccgtcttggcttgtgacatcttt
tctgaaactcagaacttcctggctactgacggctgtaccgcacgatcactttcagatttc
cggctccggcagcaggacccaatcgttcataatcaagtgtctgatcagtaccagctaatg
gcatctgtgaaagaggcatcgaagacttccaatgagatatcaaatccaaagaaaagccca
gaaaatggaagaaatcccttagagggaggaaaaaagaaggcagcgcagccgcagaacaag
aaattcaagacattttcagagattgatggcgacgaagttgagagggacgacgagcccgga
gaggaaaccgacatgtctcttgactcagaactgttcagaaatctgaatctgttaagattc
aagaagtttctgaatccttcttcgagcactcaaagggctgctattcccaatactgagctt
attgaacaggaggaggaacgtggtgttcagaggatctctgcggtcacggagaaagcagag
gaagagccagtcactgcacctcaacagatcggacaacagactgaaatggctgtatgtact
cctagtgacctagtagaccggacacaagagtttgtcttcacagagcagccaaccattgag
gaggagcttgtctgcgctcggttgttgcagttgctaaaccctgaccctctgaacacagat
gtaggctcatcagaagtcactatcgtccatactgatccaagcaggagtgggataatggtg
cattctgcctttactctggacccctgcaccagtctggccaatgctccaatcactgacacc
ttccggaggatcttgatgaggaataagtatgccggcccgtctgtggctgagagttactgc
tggccggcggtagccaggggctgtgacacggtcctcatctcccacagcggagaccagccc
ctcacctacattcccccattcctggcccacatgcagctctcctctgtcttcagcgccctc
tctgctcgcaccgggcccatagcggtgatcctgtgcccggggtgggagaaagcccagact
gtgattgacctgctggaggagagccagaccttccaagtcctccaccccatggtcatactg
ttgggactgggaaaggacgaggcaaagactgttaagatccagaacaactgccaggtggtg
gtgaccactccgttcagccttgtgcggctgctgcgtttgcactgtttcctgttcctgcgg
ctgtgtcacctggcgctggacgaagtggacctgctcttttctagagccccggacgagatg
accatcatcctgcagcacttccagagggtgacagccagcgaggagcgtgtgtcgtgcccc
agacagatcatcgcagtgggaaagcgctggagccgccccctggagggcctaatcctcaac
cacatgagcaaccccaccgttgtagtcacggtgatggaggaggccgcactctacggcaat
gtgcaccagattatcctgttgtgtctggactgcactaagatctctgtcctgctcggggcg
ctggacttcacccccgacgtggcccagaaaaccctcgtcatcaccaactctgctgaggag
gccgaaaatgtcttcaaggctgtttcaaacacatcagccttctccctgaaggtccacgag
gagttaacctaccagtttgactttgtgactgagcagtggaagaagcccattggacctggc
actcatgtcattctggtcaccaccaatgagtgtatgaagtctttgggtatctgtgatgca
acgtgtgttgtgcactacggcttcccaagctcacctaagctgtttggcagccgtctgttt
tgcatgtcccagaacttccagaacctttcagacaaggagcgtgctgcagagagcacgtct
caccctgccaagtcagtgttgctgctatctgagaggaatgcccgtcacgtaatcggggtc
ctgcgctacctaaagcgtactgaggcctcgctgcctccagagctgctgcacttcgcccag
ggagtcctgcgggccaaggaggaacagaagtcagacaagcctctgtgcagatacctcaag
agctttggcttctgcagggacagcagtgtttgttcttatcgacacagcatcagccccata
acagaccagccactgcaaccagactctggaactattgtggttctgcccttgttcatcaag
actgcttccgtctactacggacgcattgtgagtaagaaggaggaccgttatgagagcctg
gcagcagcaatgactacatactacgccgctgagaagctgggtgctaaggaggttctggag
ggagggctgtacggagtacaagaggatgaggtctaccacagggtgcgggtgactttggtg
ccggacaagcgtgagtggatgttctgcagcgtgagggctcttttcctggatgaggggcgt
gagcaggaggtgaaatcccaccagctgctgcagctgccggcccagttccacacactgccg
cctcaggctttggaaatcatcgtctgcagggcaatgcccatcgacgctgaggtcaaatgg
aaccccaaggtcaccagggccatcagtcagaagatcaaaggcctgcagcaccaagccaag
gttgttctgtgtttgggaaacaccgtctttgtagatcccatggtgcggatgacacgacta
ccaggcctgaagaccttcataaatgaatacaacgtccacgctgagatcctgagcacgggg
atgggcaccagcaaccctcagcacctggacctgctgaatgagctctgccagtgggctggg
cctggagccagtgctggggatgccccgctcaccacagtgccggatggctctggggtgacc
ttggaggacaaggtgcaggctgcagaggaggccctggtccacaggatgagggcaggtgtc
gagcgcttacactgtggccaggaggtttctgtagaccagccccagacccaaacgtctgtg
cttcatgcccagacagacttgtcccagtgccatatgaaggcctcagcagatctgcaccag
atggaccagaaagtctttgctcatgcaccccagcctcggatgaacgatgtctttatatac
ccgtcccagctctcgcccaagccacaggaggccccattcgcagcagttcctgatccgagc
gaggctcaactaccaacactcatgggcaggacccagataccttcccctctcccaacacct
agcgaagctcagatatttgcccctctcccaacacctagcgaagctcagatatttgcccca
ctcccatcaactagcgagccacagttacctgccccaacaactgagcacaacgaccccaaa
atggagcagtggaggagcctcatagctaacctccaaggcgccacacaaacacggaggcat
acagctctacaaggattcacccccaaagactggatttctgcagttccccgccccattgaa
aatggtcatttgatcgatgagaagcaagtcaacggtgagaaagtcatcagtgttgtcaag
gttgatgtggatgcaccaaaaagtttccatccacagatcaagtggttccagagagatgac
acagtcacactgaacataaagctcagagaaccagtggatcagagatgtgaattcttccct
gacagagtggtgtacagtgcgtgtgtgaatgacaggccttatcgcgctgacctggagctc
cacagtaacatcaccgcagagaggtgctcctgggagatgaagtgcaatgagccagtcatc
aggctcgtcaaacaggagaggggagactggaagatgctcctcaagcaaaagagtgctttt
gttagtttggatttcgaccgatttgaggaagatgaaaagaagacttcaaatggtctctgc
tttgtggggcacactggggaggaaggctgctacgtgagctcagacagtagcagtgactga
DBGET
integrated database retrieval system
