Oncorhynchus tshawytscha (Chinook salmon): 112219026
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Entry
112219026 CDS
T05605
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
otw04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112219026 (smc1b)
04114 Oocyte meiosis
112219026 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112219026 (smc1b)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
112219026 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
112219026 (smc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_29
AAA_23
AAA_13
Stimulus_sens_1
Motif
Other DBs
NCBI-GeneID:
112219026
NCBI-ProteinID:
XP_024236020
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All DBs
Position
LG19:47511819..47530026
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AA seq
1236 aa
AA seq
DB search
MGFLKQLDVDNFKSWRGKQVIGPFKRFNCIIGTNGSGKSNVMDALSFVMGERAATLRVKH
TRDLIHGAHIGKPVSTTASVTMRYCDDNGEELNFCRSISGDSSEYRINGRQITLAKYTEE
LEKIGIVTKARNCLVFQGAVESIAMKNPKERTKMFERISQSLELSDDYDRKKEALQKAKE
DTQFHFNKKRTATAEKKQVSSEKVEAQKYQELVDDLNQGRLQLNLFQLYHNEQGLSALSK
TLRKRQEAVAGQKTGLNGWEQSIKAQKKEHGRFTRELQQIEKEIRGQEQTLSLRRSQYIK
AKVNTSHHLKKVDDTRGALEKSQRMGAKKEEELAEFHQELQELERAWRDYERHAQEELTD
RKADIQLEEEQLERYKELKELARKQGALLSQQTKKMHWEVKADHQKIEFDQRRKKEVEVS
IKHSHTQLGDFTRRADKLEEYTNTCKSSLEESRQQEEVLSAELQRGRVRGEEVNQELGEV
LGELQNARLDSQESKRQQQRNEVLENLRRLYPDTLFGRLVDLCSPIHKKYQLAVTKVFGR
YMNAIVVSSEKVARDCIRFIKEERAEPETFLPIDYLDVSPLNERLRGVRGAKMMVDVVQC
SPTAPQLKKVIQFVCGNALVCETLKEARAIAFDGPERLKTVALDGTMFSKSGVISGGSSH
LRSKARRWDEKDMTKLKELKEQLTAELRGLVKLKRKEPELKQIQSQAQGVQTRLKYSHTE
LDTLRKKSIPNCHAEMSRLEAELANVESQLEMQKENMEIKELEMKKLQDRINQMEDVVFS
DFCAEIGVANIREYEQEHLKQQQDVDRKRLEFESQRTCLKAQLEYEQGQLEQQRKKMKKL
EETIAKEQCRVEEQKQEEEKLLVVMEESQSKVLDLKNHLLGKKTQASESKAQVDQTMKSL
QESSREQVKLQREVISAETALEQLRIWKHNLLLGCKIQGLPITLLSGSLDEISEVQLDSE
SLTESTCTTMDIYEREALMVIDYSGLGAELKDLAGEEVDPQVERLKETVSSLEGVLQRST
APNLKALEKMRVVKDKFQGVVDAFDASTKAARRSNQEFEQVKAKRFRLFSQCFEHVSVVI
DQIYKQLCRNTSAQAILSAENPDEPYLDGINYNCIAPGKRFMAMDNLSGGEKAIAALALV
FAIHSFRPAPFFVLDEVDAALDNTNIGKVTSFIREQSRESLQIIVISLKEEFYSRADALL
GVYPEFNECMFSRMLTLDLSPYPLNEENGTEREKEM
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgggttttctaaagcagttggatgtggataattttaagtcttggcgagggaagcaagta
attggaccttttaaaaggtttaactgtattattggcacaaatggatccggtaagtcgaac
gtgatggatgccctgagcttcgtgatgggggaacgggcagcgactctccgcgtgaagcac
accagggacctcatccacggagcccacattggcaagccggtgtccaccaccgccagcgtc
accatgcgctactgcgacgacaacggagaggagctcaacttctgtaggagcatatcgggg
gactcctctgagtatcgcatcaatggcagacaaatcacccttgccaagtacacagaggaa
ctggagaagataggcattgtgactaaagctagaaactgtctggtattccagggggcggtg
gagtccatcgccatgaagaaccccaaggagcggaccaagatgtttgagcgcatcagccag
tctctggagctgtctgatgactatgacaggaagaaggaggctctgcagaaggctaaagaa
gacacgcagttccacttcaacaagaagaggacagccaccgcagagaagaagcaggtctca
tcagagaaagtggaggcccagaagtaccaggagttggtggacgacctgaaccaggggagg
ctgcagctaaacctgttccagctgtaccacaacgagcagggcctgagtgccctgtcaaag
accctgaggaagagacaggaggctgtggccggtcagaagacaggactgaatgggtgggag
cagagcatcaaggcccagaagaaagaacatggacgctttaccagagagctgcagcagatt
gagaaggagatccgtgggcaggagcagaccctgtccctgcgtcggtcccagtacatcaag
gccaaggtgaatacatcccaccacctaaagaaggtagatgatacccgtggggccctggag
aagagccagaggatgggtgccaagaaagaggaggagctggctgagttccatcaggagctc
caggagctggagagggcctggagggactatgagagacatgcccaggaggagttgaccgac
cggaaggctgacatacagctggaggaggaacagttggagcgctataaggagctgaaggag
ctggccaggaagcagggggccctcctgtcccagcagactaagaagatgcactgggaggtc
aaggctgaccaccagaaaatcgagtttgaccagcggaggaagaaagaagtggaggtaagc
attaagcacagccatactcagctgggggacttcaccaggagagcagataaactggaggag
tacaccaacacctgcaagagctctctggaggagtctcgtcagcaggaggaggtgctgtct
gcggaactgcagagagggagggtgaggggggaggaggtgaaccaggagttaggggaggta
ctgggagagctgcagaacgccaggctggacagccaggagagtaagaggcagcagcaacgc
aacgaggtcctggaaaacctccgcagactctaccctgacacactgtttggtcgtctggtg
gacctgtgcagccccatccataagaagtaccagctggccgtcaccaaggtgtttggacgc
tacatgaacgccatagtagtgtcgtcagagaaggtggctcgggactgcatccgctttatc
aaagaggagagggccgaaccagaaaccttcttacccatagattacctggacgtgagccct
ctgaatgagcggctgcgcggggtgcgtggagctaagatgatggtggacgtggtgcagtgt
tcccctaccgctcctcagctgaagaaagtcatccagtttgtgtgtggcaacgctctggtc
tgtgagacactcaaagaggccagagccatcgccttcgacggacctgagcgactcaagacg
gtggctctggacggtaccatgttctccaagtcaggggtgatctctgggggctccagccac
ctgcggagcaaggccaggcgctgggacgagaaggacatgaccaagctgaaggagctcaaa
gaacagctgactgcagagctacgtggtctggtgaagctgaagcgtaaggagcctgagctg
aaacagatccagtctcaggctcagggggttcagacccgtctgaagtactcccacactgaa
ctggacaccctccgcaagaagagcattcccaactgccacgcggagatgtctcgcctggag
gctgagctggccaacgtggagtctcagctggagatgcagaaagagaacatggagatcaag
gagctggagatgaagaagctccaagacaggatcaaccagatggaggacgtggtgttctca
gacttctgtgctgagataggagtggccaacatcagggagtatgaacaggagcatctcaaa
cagcagcaggatgtagacaggaaacggttggagtttgagtctcagcggacctgtctgaag
gcccagttggagtatgaacagggtcaactggagcagcagaggaagaagatgaagaaacta
gaggagaccatcgccaaggagcagtgcagagtggaagaacagaagcaggaggaagagaag
ctgctggtggtgatggaagagagtcaatctaaagtgttggatctgaagaatcatctgctg
gggaagaagacccaggcttctgagtctaaggcccaggtggaccaaacgatgaagagcctt
caggagagctccagagagcaggtgaagctgcaaagggaggttatctcagctgagacagcc
ctggagcagttgaggatctggaaacacaacctgctgctaggttgtaagatccagggcctg
cccatcacgctgctgtctggcagcttggacgagatcagtgaggtgcagctggactcagag
tcactcacagagagcacctgcaccactatggacatctacgagagagaggcgctgatggtc
atcgactactctggcctgggagctgagctgaaggatcttgcaggggaggaggtggacccc
caggtagagcgtcttaaggagacagtgtcctctctagagggggtcctacagcgctccaca
gcccccaaccttaaagccctggagaaaatgagggtggtcaaggacaaattccagggggtg
gtggacgcgtttgatgccagcaccaaggcagccagaaggagtaaccaggagtttgagcag
gttaaagccaaacgcttcagactcttcagtcagtgctttgaacacgtctctgtcgtcatc
gaccagatctacaaacaactgtgcaggaacaccagcgctcaggccattctgagtgctgag
aacccagatgagccctacctggatggcatcaattacaactgtattgctcctgggaaacgc
ttcatggccatggacaacctgtctggaggagagaaggccatcgctgccctggctctggtg
ttcgcaatacacagcttccgtccagctccgttctttgtcctggatgaggttgatgcagcc
ctggacaacaccaatattggcaaagtgaccagctttatcagggagcagtcgagagagagc
ctccagatcatcgtcatctctctgaaggaggagttctactctagagctgacgctctgctg
ggggtctaccctgagtttaacgagtgcatgttcagccgcatgctgacgctggacctaagt
ccctatcccctgaacgaagagaacggaacagagagagagaaggagatgtaa
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