Oncorhynchus tshawytscha (Chinook salmon): 112219063
Help
Entry
112219063 CDS
T05605
Name
(RefSeq) DNA-binding protein RFX7
KO
K09175
DNA-binding protein RFX7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112219063
Transcription factors [BR:
otw03000
]
Eukaryotic type
Other basic domains
RF-X
112219063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFX5_N
RFX_DNA_binding
Pox_D5
Cdc6_C
Motif
Other DBs
NCBI-GeneID:
112219063
NCBI-ProteinID:
XP_042157855
UniProt:
A0AAZ3QV44
LinkDB
All DBs
Position
LG19:55324293..55379372
Genome browser
AA seq
2455 aa
AA seq
DB search
MVIQRLYAPHHQTVGTPLRRHAQPHCQGCSAISRHIESGLLVKPPPTKPPPLNENIVVMA
NEDEQQQHGQLKLNSVLGSFPTLVPELQGPEANALQYKIKNSICKSVQSKVDNILQDVEK
FTDIEKLYLYLKLPSGPSNGNDKGIARTENQRASTPGLCDQSGMSSSRTQQMYAFNWIRN
HLEEHPETSLPKQEVYDEYKSYCDSLAYHPLSAADFGKIMKNVFPNMKARRLGMRGKSKY
CYSGLRKKAFVHMPSLPNLDLHKSGDGCESMEPSSGQSPSAEDEMRSAACGLVCEWAQKV
LSRQFDAVEDLARFLLNSHYIGTKSMAALTIMTGAPTGLKTPTPTSAFVPTSEASSFQPQ
VKTLASPSVDAKQQLQRKTQKKQQEQKLRSPLPGEAQGQNQARRTEASTPGPAIPCGSPA
LLSPQPTIGIVVATVPSPITVQRSRQLMTSPSPVASAEGKVMPTVNFQVVTHTQSLTHRQ
SPKTPQNISASPVGDRLARHRYPQILPKPSATGAITLRSPPTLLITNSPMKTHHVIQPQL
SSHVNVVKMTAISLTPSNTISTSSNSMVLRPASASAGVGTTTTFTTIATIEEVQQQGQSQ
GGPTATPQCPAVRPGAPVSTVAPEAIITDNNPGVNSGKLSTIQKSPGGSNRPERATKYRA
SSEPSLLVICSPGPERVAARTKSYPSSSSPPTSATNAATKQDSNNNSSTANCHQESPFYL
TVVPSANQNTPSVSGKSSSSNGLSAVTLLSARDSSSCASRSMSPRKRTGPGLDSSHVIPV
KRVFISQQPLGVTFDPKPVVTAAVKRVPARQSTPARPESAPCRVTVKQHLVPTQILAPSD
SPVANAEISSFSSQTVSVKPQSSSLLLVKQEDQSSLTPRLSTVSSHTSSTEASGTTTTAV
SEQQQQQQQKQQQQALLQQITAGTVGAQQHSVSVMAVGAQQHSEVSAMAVGAQQHPEVSG
MAVGAQQHPEVSGMAVGAQQHSVSVMAVGAQQHSVSVMAVGAQQHSEVSVMAVGAQQHPV
SVMAVGAQQHPEVSVMAVGAQQHPVSVMAVGAQQHSVSGMAVGAQQHSEVSAMAVGAQQH
SVSVMAVGAQQHSVSVMGNMTSTMLEESAVGYVEELQKQAFTQTIAADHTKQQALDSTDQ
HQLSNIMSQTSDSSDQLSGLHQEMVHFASSASQHGSTMDYFSFNDDDMTQDSIVEELVQM
EEQMKLKGLQPLFSTCVDNISLQGQPGGPQGSILNTHHQEDSSSFYQSAHSSITPTLTPT
PTPTEMTLGGHELTRESPCCHHSMAPITPVEGPLGGRHTPISALSNCSSGIPPSPVECRN
PFAFTPINSSMAGGYHDASVVSVSSSPIKPMQRPMATHPDKAKLEWINNRYNSSGTEATG
GVGAGSGSGVSISNHSLGGLLPSYQDLVDDHFRKPHAFAVPGHSGQCFQAQSRQQDGSHF
GHLTPISPVQQQLTSVSTTPTNTASKQDESFAVPAPLDSKGGALPSGGGAFRCRSVSPAV
SQMTFSGTVTTPNAGTTTRLVVSQFSSPMTSQEILIILSNSQSVGGNLHSMAQRSQSVPL
NIMMQSVVEMQGIQGQNQSNATKITNVLLSKMDSDVNDTVRGLGINNLPSNYTARMNLTQ
MLETQSQSQTVPGGFTTGGDGGGGGNAHQSQLQTVSSSPASFELQQHGGYLTSTGGDGGE
VSFNQAQSGPGGEDVDLELQQIQELQEASGQLHPQLLQTQAMLLQDPQLQNPKLHTPQAQ
LQSPQLQSPQLHTPQAQLHTPQAQLHTPQAQLHIPQAQLHIPQAQLHIPQAQLHIPQAQL
QSPHTQLHIPHTQLHIPHTQLQSPHTQLQSPHTQLQSPHTQLQSPHTQLQSPHTQLQSPQ
LQSPQLQSPAPESPHPAPESPHPAPESPHPAPESPRPAPESPRPAPESPGPAPESPAPES
PHPAPESPHPAPESPATESPATDSPHPAPESPAPESPAPHSPGPAPESPAPESPHPAPES
SHPAPESPHPAPEAPAPHSPGPAPESPAPESPHPAPESPAPEAPAPHSPHPAPEPPLQSP
HTQLQSPHTQLQSPHTQLQSPHTQLQSPQLQSPQLQSPQLQSPQLQSPQLQSPQLQFPHT
QLQSPHTQLQSSQLQSSQAQLHIPHTQLQSPQPQRPQLHIPHAQLQSPQLQSPHTQLQSP
HTQLQSPHTQLQSPQPQLHIPQAQLQSPQLQSPHTQLQSTHTLLQSTHTQLQSPQLQIPH
TQLHSPHTQLQSSQLQSSQAQLHIPHTQLQSPHTQPQRPQLHIPQAQLQSPQLQSPQLQS
PQAGFRLLQPITTQQQQQQQDEEDKAQQQDEEDKAQQQLDFSNTVKDLLGDDGLNVHAEG
LNVHAEGLNVHAEGLNPSSQLVGQVASELNAAVASDFTNDIRLISDLSSSITDLNTLDAD
LLFDPSNQQQEQYEDATLEELKNDPLFQQICSDTVNSSFDWLECKDQPTTVEMLG
NT seq
7368 nt
NT seq
+upstream
nt +downstream
nt
atggttattcagagattatacgctcctcatcatcaaacggtgggtactccgctccggcgt
catgcacagccacactgccagggatgcagcgctatatcaaggcatatagaatcaggccta
cttgttaaaccccccccgaccaaaccacctcccctcaatgagaatatcgtcgtgatggcc
aatgaagatgaacaacaacaacatggtcagctgaagctcaactcggtattgggctctttt
ccaacactagtaccagaactccagggccctgaggccaatgcgttgcagtacaaaattaag
aattcaatttgcaagtctgtccagtcaaaagtggacaacatattgcaagatgttgagaag
tttacagacatcgaaaaactctacctctacttgaagttgccttctggtcccagcaatggc
aatgataaaggcatcgctaggactgagaaccagagagcctccactccgggactatgtgac
cagagtggcatgtcgtccagccgaacacagcagatgtacgctttcaactggatccgcaat
cacctagaggagcaccctgagacatcactgccaaagcaagaggtgtacgacgagtacaag
agctactgtgacagtcttgcctaccacccactgagtgctgcagactttggaaagatcatg
aagaacgtctttcccaacatgaaggctcgccgcctgggcatgagaggcaaatctaaatac
tgttatagtggactgaggaaaaaagcttttgttcacatgccctctctgcccaacctggac
ttacataaatcaggcgacgggtgtgagtcgatggagccgtcgtcgggccagtctcccagt
gcggaggatgagatgcgctcagcggcctgtggcttggtgtgtgagtgggctcagaaggtc
ctcagcagacagtttgatgccgtggaggacctggctcgcttcctgctcaacagtcactac
ataggaaccaagtctatggctgccctcaccatcatgactggggctcccacaggtctgaag
acgcccacgccaacctctgcgttcgtgcccacgtccgaggcctcgtccttccagccgcag
gtgaagacgctggcctctccctcggtggacgccaagcagcagctccagaggaagacccag
aagaaacagcaggagcagaagctccggtcccccctgcctggagaggcccagggacagaac
caggccaggaggaccgaggccagcaccccagggccagctatcccctgtggaagtcctgcc
ctgctttcaccgcaacctaccattggtattgtggtggcaaccgtccccagccccatcacg
gtccagaggagcaggcagctgatgacatcccctagcccggtggcgtccgccgaggggaag
gtcatgccaacggttaacttccaggtggtcacccacacccagtctctgacccacagacag
tcccctaaaacgccccagaacatctcagccagccccgtgggagaccgcctggctaggcac
aggtacccccagatcctccccaagccctctgccacgggggccatcaccctgcgttcgccc
cccaccctgctcatcaccaacagccccatgaaaacccaccacgtgatccagccccagctc
agctcccacgtcaacgtggtcaagatgaccgccatctccctgaccccgagcaacactatc
agtaccagcagtaacagtatggtcctcaggccagcttcagcctcggccggggtgggaacc
accaccacctttaccaccatcgctaccatagaggaggtccagcaacagggacagagccag
ggaggccccacagccaccccacaatgccctgcagtacggcctggcgccccagtctccaca
gtggctcctgaggccatcatcactgacaataacccgggcgttaattctggtaaactgagc
accatacagaagtcccccggtgggtccaatcgtccagagagggccactaagtaccgagcg
tccagcgaaccctcgctcctggtcatatgctccccaggacctgaaagagttgccgccagg
accaaaagctacccttcctctagctcccctcccacctctgccaccaatgcagcgaccaag
caggacagcaataacaacagcagcaccgccaactgtcaccaagaaagtcctttttatttg
actgttgtgccctcggccaatcagaacactcctagcgtcagtggaaagtcctcctcgtcc
aatggcttatcggctgttaccctattgtctgctagagactcctcctcctgtgcgtcacgt
tctatgagtcctcggaagcgaaccggccctggtctggattcctcccacgtgatccctgtg
aagcgtgtcttcatctcccagcaacctttaggtgtgacctttgaccccaaaccagtggtt
accgccgctgtcaagagggtcccagccagacaaagcacgccggcccgaccggagagcgcc
ccctgtcgagtgacggtgaaacaacacctagtgcccacgcagatcctggcgccgtctgac
tcgcccgtcgcgaacgcagagatctcctccttctcctctcagacagtcagtgtgaagccc
cagtcctcctcgttgctgctagttaaacaggaagaccagtcctctctaactccacgtctc
agcactgtcagcagtcacaccagcagcactgaagcctctgggacaaccaccaccgcagtg
tctgagcagcagcagcaacaacagcagaaacaacagcaacaggccttactacagcagatc
acagcagggacagtaggagcacagcaacactctgtctctgtgatggcagtaggggcacag
caacactctgaggtctctgcgatggcagtaggagcacagcaacaccctgaggtctctggg
atggcagtaggggcacagcaacaccctgaggtctctgggatggcagtaggggcacagcaa
cactctgtctctgtgatggcagtaggggcacagcaacactctgtctctgtgatggcagta
ggagcacagcaacactctgaggtctctgtgatggcagtaggggcacagcaacaccctgtc
tctgtgatggcagtaggggcacagcaacaccctgaggtctctgtgatggcagtaggggca
cagcaacaccctgtctctgtgatggcagtaggagcacaacaacactctgtctctgggatg
gcagtaggagcacagcaacactctgaggtctctgcgatggcagtaggagcacagcaacac
tctgtctctgtgatggcagtaggggcacagcaacactctgtctctgtgatggggaacatg
acaagcacaatgttggaagagtcagctgtaggatatgtggaggagctgcagaaacaggcc
ttcactcagactatcgcagcagaccacaccaagcagcaggccctggattctacagaccaa
caccaactctccaacatcatgtcccagacctcagactcctctgatcagttatctggcctt
caccaggagatggtgcactttgcctcctcagcctcccagcacggctccaccatggactac
ttctcctttaacgatgacgatatgacccaggacagcatagtggaggaactggttcagatg
gaagaacagatgaagctgaaaggcctccagccgttgttcagtacctgtgtggataatatc
tctctccagggccagcctgggggcccccaggggtccatcctcaacactcaccaccaggag
gatagttcctctttctaccagtctgcccatagcagcattacccctaccctgactccaacc
cctacccccacggagatgactctcggtgggcatgagctgaccagagagagcccctgttgc
catcacagcatggcccctatcacgcccgtggaggggcctctaggaggacgacacacccct
ataagcgctctgtctaactgttctagcggcatcccgcccagcccggtggagtgcaggaac
ccgtttgccttcacccctatcaactccagcatggcagggggttaccacgatgcctccgtg
gtgtctgtctcctccagtcccatcaagcccatgcagagacccatggccacgcaccctgat
aaggctaaactggagtggatcaacaaccgctataacagtagtggtactgaagctactgga
ggagtcggagcagggtcaggttccggggtatccatctctaaccacagccttggtggactc
ctgcctagttaccaggatctagtggatgaccatttccgtaagccgcacgccttcgctgtc
ccgggccacagtggccagtgtttccaggcccagtccagacagcaggacggcagccatttt
ggacatctcacccccatctctccggtgcaacagcagttgaccagcgtatcaaccacaccc
accaacacggcaagcaaacaggacgagagcttcgctgtgcccgcccctttggacagcaag
ggtggagccttgccatcagggggcggggccttccgttgccgcagcgtcagccccgccgtg
agtcagatgaccttcagcggtaccgtcacaacccccaacgccggcactaccactcgattg
gttgtctcgcagtttagttcccccatgacctcacaggaaatactcatcattctgtccaac
agccaatcggtgggcggcaacctccacagcatggcccagcgcagccaatcggtgccctta
aacatcatgatgcagagcgttgtggagatgcagggcatccagggacaaaaccagagtaat
gccactaagatcaccaacgtcctcctgagtaagatggactctgacgtaaacgacactgtg
aggggcctgggcatcaacaacctcccttccaactataccgcccgcatgaacctcacccag
atgctggagacccagtctcagagtcagactgtccctgggggcttcaccactggaggagat
ggaggaggaggggggaacgcccaccagtctcagctgcagactgtcagctccagccctgcc
tctttcgagctccagcagcacgggggttatctcaccagtaccggaggagacggtggggag
gtgagcttcaaccaagcacaatcaggccctggtggtgaggatgtggacctggagctacag
cagatccaggagcttcaggaggcctcaggacagctccatccccagctactacaaacccag
gctatgctgctccaggacccccagctccagaatcccaagctccacactccccaggcccag
ctccagagtccccagctccagagcccccagctccatactccccaggcccagctccacact
ccccaggcccagctccacactccccaggcccagctccacattccccaggcccagctccac
attccccaggcccagctccacattccccaggcccagctccacattccccaggcccagctc
cagagtccacacacccagctccacattccccacacccagctccacattccccacacccag
ctccagagtccccacacccagctccagagtccccacacccagctccagagtccccacacc
cagctccagagtccccacacccagctccagagtccccacacccagctccagagtccccag
ctccagagtccccagctccagagcccagctccagagtccccgcacccagctccagagtcc
ccgcacccagctccagagtccccgcacccagctccagagtccccgcgcccagctccagag
tccccgcgcccagctccagagtccccaggcccagctccagagtccccagctccagagtcc
ccacacccagctccagagtccccacacccagctccagagtccccagctacagagtcccca
gctacagattccccacacccagctccagagtccccagccccagagtccccagctccacat
tccccaggcccagctccagagtccccagctccagagtccccacacccagctccagagtcc
tcacacccagctccagagtccccacacccagctccagaggccccagctccacattcccca
ggcccagctccagagtccccagctccagagtccccacacccagctccagagtccccagcc
ccagaggccccagctccacattccccacacccagctccagagcccccactccagagtccc
cacacccagctccagagtccccacacccagctccagagtccccacacccagctccagagt
ccccacacccagctccagagtccccagctccagagtccccagctccagagtccccagctc
cagagtccccagctccagagtccccagctacagagtccccagctacagtttccccacacc
cagctccagagtccccacacccagctccagagttcccagctccagagttcccaggcccag
ctccacattccccacacccagctccagagtccccagccccagaggccccagctccacatt
ccccatgcccagctccagagtccccagctccagagtccccacacccagctccagagtccc
cacacccagctccagagtccccacacccagctccagagtccccagccccagctccacatt
ccccaggcccagctccagagtccccagctccagagtccccacacccagctccagagtacc
cacaccctgctccagagtacccacacccagctccagagtccccagctacagattccccac
acccagctccatagtccccacacccagctccagagttcccagctccagagttcccaggcc
cagctccacattccccacacccagctccagagtccccacacccagccccagaggccccag
ctccacattccccaggcccagctccagagtccccagctccagagtccccagctccagagt
ccccaggccgggttccgactcctccagcccatcaccacccagcagcagcaacaacaacag
gatgaagaagacaaggcacaacaacaggatgaagaagacaaggcacaacaacagctagac
ttcagcaacactgttaaagacctgttaggtgacgacggcctcaacgtccacgctgaaggc
ctcaacgtccacgctgaaggcctcaacgtccacgctgaaggcctcaaccctagctctcag
ctggttggtcaggtggcctcggaactcaacgccgctgtggcttccgacttcaccaacgac
atcaggctgatctctgacctctccagtagcatcacagacctgaacacgttggacgccgac
ctgctgttcgatccgtccaatcagcagcaagaacagtacgaagacgccacactggaagag
ctgaagaacgatcctctgtttcagcagatatgtagtgatactgtgaactcctcgttcgac
tggctggagtgcaaagaccagcctactaccgtagagatgttgggctaa
DBGET
integrated database retrieval system
