Oncorhynchus tshawytscha (Chinook salmon): 112219072
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Entry
112219072 CDS
T05605
Name
(RefSeq) transient receptor potential cation channel subfamily M member 1-like
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112219072
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112219072
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSDAT_euk
TRPM2
TRPM_tetra
Ion_trans
LSDAT_prok
YVC1_C
Glutaredoxin2_C
Motif
Other DBs
NCBI-GeneID:
112219072
NCBI-ProteinID:
XP_042157137
LinkDB
All DBs
Position
LG19:complement(59415742..59551757)
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AA seq
1834 aa
AA seq
DB search
MEKGAGGKWGSGSFKRVSIKRSASSASNKAQKAWIERIFQKRECIHIFPSKDPTRCSCGQ
LITQHVVIPLGALTNKLSEENHQLVQIDPPQQERWSVAKNTQTSPTDAFGTIDFQGGGLI
NKAMYIRVSHDSKPDNLLQLMVKDWQLELPNLLISIHGGLQNFDLQPKLKQVLGKGLIKA
AVTTGAWIFTGGVSTGVIRHVGDALKDHSSKSRGKVCAIGIAPWGIIENKEDLIGRDVTR
PYQTMSNPLSKLSVLNNSHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRLGQGV
PLVCLIVEGGPNVISITLESLKEEPPVPVVVCDGSGRASDIMSFAHKYCEEGGLITDDVR
DQLLVTIQKTFNYSKSQSQQILLMVMECMKKKELITVFRMGSEGQQDIEMAILTALLKGT
NASAPDQLSLALAWNRVDIARNQIFVYGHHLPPASALANSSGTVATTTERPKSPAAAPRN
KAKARGKKGKGGKAKPEPPEETDPRKIELMRWVNSLEQAMMDALVLDRVDFVKLLIENGV
NIHHFLTIPRLEELYNTRLGPANTLHVVVRDVKKGNLPPDYQITLIDIGLVMEYLMGGAY
RCNYTRKNFRALYNNLYGLKRPKALKMLGLEDDEPRGKKKKGKKKKEEEVEIDVDDPEVC
RFTYPFHELMVWAVLMKRQKMALFLWQRGEEAMAKALVACKLYTAMAKESSELVDDIAQD
LDNNSKEFGQLAYELLDQSYKHDEQVAMKLLTYELTNWSNSTCLKLAVAAKHRDFIAHTC
SQMLLTDMWMGNLRMGKNPGLKVILGIIFPPSILLLVDFKGEDQSYTADSEEGKDKDDDA
GKDDVVSRKGDEEEGSSNVRRKPIGRRIYEFYDAPFTKFWFNTISYLGYLMLYNYIILVK
MERWPSIQEWTVIAYILTLGFEKVRQILMSEPGKLKQKINVWLQEVWNITDLAAISTFLV
GLLLRLQNEPLLGIGRVIYCIDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVII
MLVVLMSFGVSRQAILHPDEEPTWRLARNIFYMPYWMIYGEVFADSIDLYAMEINPPCGE
NLYDEDGKKLPPCIPGAWLTPAIMACYLLVANILLVNLLIAVFNNTFMEVKAISNQIWKF
QRYQLIMIFHDRPILPPPLIVFSHLYLLFRSFRCTKKNDGDLNEKDRGLKLRLNPEELKA
LFEFEEQCVEEYFREKEDEHHSSSDQRIKVTSERVENMSMRLEEVNERENTMKASLQTVD
LRLAQLEDIHSRMMNALEKLAGVDHSELKRSHSTHSSYCDPSSLLRASSINSADGYSMYR
FQMDVEEAERKAQLGTERQGSVRSRLGSERQGSVLSRLGSERQGSLLSRLGSERQGSVSR
TSNLSVGPERQGSLQKLSSASTLTVGRERHGSLQTRVSKDYGQPLDMDRADRTRPSSYVD
ILISPCEQRAEGETDGGETKSDIPKDKVPEPTDPLDVALAKAGLTREKTKLEKSRSVKCY
PSNPVDHCITSRSRAKSTILYDQTAADCEALWVADYNPKQESPDSRDPPDSALPKEGLPR
EKSKLVATMSSPLAKFIHPIPYYHTTPPFTPRSTRTRAKSNISPTTAGDESEALWAADYR
SVIDQVSDAPGQLPACWEYKVHHIHIGQQPKVSVVRPHGQLLDTQRFSEPEPEKLESNKI
PLIPPAVETELLKQHSDMVQQDASLVPPEALLVPPDIKLSPPPLTELDPPETELVPRVLP
LGPPTIATYLVLPTIKTHLHWTTVKYSRTIHHWTTVKYSRTIYHWTTVKYSRTIHHWTTV
KYSRTIHHWTTVKYSRTIHHWTTVKYSRIIQHSC
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggagccggagggaagtggggcagcggctcctttaaacgagtttccatcaaa
cgctcggcatccagtgcctccaataaggcccagaaagcgtggatcgagaggatctttcag
aagagagaatgtattcacatattccccagcaaggaccctacaagatgttcgtgtggtcag
ctcataacgcagcacgtggtgatcccgctgggcgctctgaccaacaagctgtcggaagag
aaccatcagctagtccagatcgacccgccccagcaggagaggtggtctgtggccaaaaac
acacagacctcccccacggatgccttcgggaccatcgacttccagggtggaggcctcatc
aacaaggcaatgtacatcagagtgtcccatgactctaagccagacaatctgctccaactg
atggtgaaagactggcagctggaactccccaacctgctcatctccatccacggaggcctg
cagaactttgacctgcagcccaaactcaaacaggtgttagggaagggactcatcaaggct
gcagtcaccaccggagcatggatcttcactggtggagtcagcactggtgtgattcgtcac
gtgggggatgccctgaaggaccactcctctaagtccagagggaaggtatgtgccatcggc
atcgctccctggggcatcatagagaacaaggaggacctcatcggtagagatgtaacacgg
ccgtaccagaccatgtccaacccgctgtccaagctgtctgtcttgaacaacagccactcc
cacttcatcctggccgacaacggcactacagggaagtacggagcggaggtgaagctacgc
cgccagctggaaaaacacatctcactgcagaagatcaacacacgcctgggccagggggtc
cctttggtgtgtctgatagtagaaggaggtcctaatgtcatctccatcaccctggagagt
ctgaaggaggaacctcccgtccccgtggtggtctgtgatggcagcgggagggcatcggac
atcatgtccttcgctcacaaatactgcgaggagggaggtctgataactgacgacgtgagg
gaccagctgctggtgaccatacagaagaccttcaactatagtaagagccaatcacagcag
atcctgctcatggtcatggagtgcatgaagaagaaggagctgataacagtgtttcgaatg
ggttctgaaggacagcaagatattgaaatggccattctgactgctttattaaaaggaacc
aacgcctctgccccggaccagctgagtctagctctggcctggaacagagtggacatagca
cgcaaccagatctttgtctacggtcaccatctaccacctgccagtgccctagctaacagc
agtggtaccgtagccactaccacagagaggccgaagagtccagccgctgcccccaggaac
aaggccaaggcccgggggaaaaaggggaagggagggaaggccaagcctgaaccaccagag
gagactgaccctaggaagatagaactaatgcgatgggtgaactctctggagcaggccatg
atggatgccttggtgctggacagggtggactttgtcaagctgctgatagagaacggcgtc
aacatccaccacttcctcaccattcctcgcctggaggagctgtacaacacgagactgggt
cctgctaacacgttgcatgttgtggtgagagatgtcaagaagggcaacctcccgccagac
taccagatcactctgattgacattggtctggtgatggagtacctgatgggtggggcgtac
cgctgtaactacaccaggaagaacttcagggcgctttacaacaacctctacgggctgaag
aggccaaaagccttgaagatgctggggctggaggacgacgagccgaggggaaagaagaag
aaagggaagaagaagaaagaggaggaggtagagatagatgtggacgaccctgaggtctgt
cgcttcacctaccccttccacgagctgatggtgtgggccgttctcatgaagcgccagaag
atggcactgtttctgtggcaacgtggggaggaggccatggccaaggctctggtggcctgt
aagctatacacagccatggctaaagagtcatctgaactggtggacgatatcgcccaggac
ctggacaacaactccaaggagtttggccagcttgcctacgagctcctggaccagtcctat
aagcacgatgaacaggtggccatgaagctgctgacgtatgagctgaccaactggagcaac
tctacctgtctgaagctggccgtggccgccaagcacagagacttcatcgcccacacctgc
agtcagatgctgctgaccgacatgtggatgggaaatctgagaatggggaagaaccctggg
cttaaggtgattctgggcatcatattccctccatcaattctgctgctggtggacttcaaa
ggagaagaccagtcctacacagctgactctgaagaagggaaagacaaggacgatgacgct
ggcaaggatgacgttgtgtcaaggaagggggatgaagaggagggcagcagtaatgtcagg
aggaagcccattggacggaggatctatgagttctatgatgccccgttcaccaagttctgg
ttcaacaccatctcctacctgggctacctgatgctgtataactacataatcctggtgaag
atggagcgatggccgtccatccaggagtggaccgtcattgcctacatcctaacgctcggc
ttcgagaaagtcagacagatcctgatgtcagagcctgggaagctgaagcagaagatcaac
gtatggctgcaagaggtctggaacatcactgacctggcagccatctccaccttcctggtt
ggccttctgctgaggctgcagaacgaacccctcctgggcatcggacgtgtcatctactgc
atagacatcatcttctggtacatcagggtgctcgacatcttcggggtcaacaagtacctg
ggaccctatgtcatgatgattgggaaaatgatgatcgacatgctgtacttcgtgataatc
atgttggtggtgttgatgagtttcggggtgtcgcggcaggccatcttgcaccctgatgag
gagccaacatggcgtttggccaggaacatcttctacatgccctactggatgatctatgga
gaggtgtttgctgactcgatcgacctctatgcaatggaaatcaacccgccgtgtggtgag
aacctgtatgatgaggatggtaagaagctgcctccgtgtatccctggagcctggctgacc
ccggccatcatggcctgttatttactggtggccaacatcctgctggtcaacctgttgatt
gctgtcttcaacaacacttttatggaggtgaaggccatctccaaccagatctggaagttc
cagagatatcagctgattatgatcttccatgaccgtccgatcctccctccgcccctcatc
gtgttcagtcacctctacctcctgttcagaagctttcgctgcaccaagaagaatgatgga
gatctgaatgagaaggacagaggactcaagctacggctaaaccctgaggagctgaaggct
ctatttgagtttgaggagcagtgtgtggaggaatacttcagagagaaggaagacgagcac
cattcatccagtgaccagaggatcaaggtcacatcagaacgggtggagaacatgtccatg
cgtctggaggaggtgaatgagcgggagaacaccatgaaggcgtccctgcagacggtggac
cttcgcctggctcagctggaagacatccacagccgcatgatgaacgccctagagaagctg
gctggggtcgaccattcagagcttaaacgctcccattccacacactcctcctactgcgac
ccgtcctccctgctccgagccagctccatcaacagcgctgacggctacagcatgtaccgc
ttccagatggacgtggaggaggctgagaggaaagcccagcttggcactgagaggcagggc
agtgtacggtctcgcctagggtctgagaggcagggcagtgtgctgtctcgtctagggtct
gaaagacagggcagcttactgtctcgtctagggtctgaaagacagggcagtgtcagcaga
acatccaacctgtctgtaggtccggagagacagggcagtctacagaaattgtctagcgca
tctaccctgactgtaggccgggagcgacatggcagcctacaaaccagagtttccaaggac
tacggccagccgttagacatggacagagcagacaggacacggcccagctcctatgtggac
atcctgatctccccatgtgaacaaagggctgaaggggagacagatggaggagaaaccaag
tctgacatacctaaagacaaagtaccagaacccacagatccactggatgttgcattagct
aaagcaggtctaacaagagagaagaccaagctggagaagtctagatctgttaaatgctat
cccagcaaccctgtggatcactgcattacctctagaagcagggctaagagcactatcctc
tacgaccaaactgctgccgattgcgaggccctctgggttgccgactacaatcctaaacag
gaatccccagacagtagagatcctccggatagtgcattacctaaagaaggtctgccaaga
gagaagtccaagctggtggcaaccatgtcctccccattggcgaagtttatccatcctatc
ccatactaccacaccacacctccgtttacccctcgatccactaggaccagggctaaaagc
aacatctccccaaccacagcaggggatgagagtgaggccctctgggctgcagactacaga
tctgtgatagaccaggtatccgatgctccaggccagttgccagcctgctgggagtacaag
gtccaccacatccacatcggacaacagcccaaggtctctgtggtcaggcctcatggccag
ctacttgacacacagagattctctgaacctgagcctgaaaaactggagtctaacaaaatt
cctctgattccaccagctgtagagactgaactacttaaacagcattctgacatggttcaa
caagatgcttcgctggttccaccagaggctttgctggttcctccagacattaagttgtca
cctcctcctctgactgagctggatcctccagagactgagttggttccacgagttcttcca
ctgggtcctccaactatagcaacatacctggttcttccaaccataaaaacacacctgcac
tggaccactgtcaaatactccagaaccatccaccactggaccactgtcaaatactccaga
accatctaccactggaccactgtcaaatactccagaaccatccaccactggaccactgtc
aaatactccagaaccatccaccactggaccactgtcaaatactccagaaccatccaccac
tggaccactgtcaaatactccagaatcatccagcactcctgctga
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integrated database retrieval system
