Oncorhynchus tshawytscha (Chinook salmon): 112219143
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Entry
112219143 CDS
T05605
Symbol
irx5b
Name
(RefSeq) iroquois-class homeodomain protein IRX-5b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112219143 (irx5b)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
112219143 (irx5b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
PGA2
MRP-S32
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
112219143
NCBI-ProteinID:
XP_024236118
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Position
LG19:complement(44705242..44707932)
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AA seq
446 aa
AA seq
DB search
MAYPQGFLFQPSVSLALHSCPPFSSSVILGRPRTDEMGRPSTGSAFAPYAGSPAFNGTSP
GFNSYLQYSGEQRAAMNSFVGSAYDPSAGITGSLEYHPFGGALGPYPYGDPAYRKNATRD
ATSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWNPRN
RSEDEEEDDNIDLEKNDDDDEPLKPTAEIGLKNEGDGHHPHPVGISREKEDNSSNDMEPV
LTDPDLKDHGDRRVPEMLGPTTTASPQNVHLGAERDSDSADTSPPAPRRNDTGNSSNATS
VIDSPLPAPKPKLWSLAEIATSSDKCKGCSDGAQNVSRQLRTEIPASVSSPPRAAPQNHF
PHSAALSRHVYYTSPFFQGYSNYHGAFGQLHSPGSNVGSATHLNGLHQTMLHRAEALARD
SKARSQTQIDLCKDLRYELKKGMTHV
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatcctcaaggctttctcttccaaccgtcggtttctctggctctccattcctgt
cccccgttcagttccagtgtgattttaggaagaccgaggacagatgaaatgggccggccg
tctacaggctcagccttcgcgccgtacgcgggatcaccggcgttcaatggcacgtcgcca
ggcttcaactcttaccttcagtacagcggagagcagagggcggcaatgaactcgtttgtg
ggttccgcgtatgatccttcagccggcatcactggctctttagaatatcacccgtttggt
ggtgcattgggcccctatccatatggcgaccctgcatacaggaaaaatgctacacgggat
gcgacttccactctcaaagcgtggctcaatgaacatcgcaaaaacccttaccccaccaag
ggcgagaagatcatgctggcaatcatcaccaagatgacccttacccaagtgtccacctgg
ttcgctaacgccagaagacgtttgaagaaagagaacaaaatgacgtggaacccgaggaat
agaagtgaggatgaggaagaggatgacaacattgacctggaaaagaatgacgacgacgac
gagccactcaagcccacggcagaaattgggttgaaaaatgaaggagatggacatcatcca
catccagtgggaatctcccgtgagaaagaggacaatagcagcaatgatatggaacctgtc
ttaactgatccggatttaaaggaccacggggacaggagagtgcccgagatgctgggaccc
actaccacagcatctcctcaaaacgtgcaccttggagcggagagggattcagactcggcg
gacacaagtccacctgcaccgaggcgtaatgacacaggcaactccagcaatgccacgtca
gtgattgactcgccccttccagccccaaaacctaaactgtggtcgctggcggagattgca
acttcttcggacaaatgtaaaggatgtagcgatggtgcccagaacgtgtcccgacaattg
cgcacagagattccggccagtgtgtcatctccaccgcgagccgctcctcagaatcatttc
cctcacagcgcagccctttcaagacatgtctattatacatctccctttttccagggttac
tcaaactatcatggcgcttttggacagctgcacagccccggatccaacgtggggtcagcg
acacatttaaatggattacatcaaactatgttacacagagccgaggcactggcaagagat
agcaaagccaggagccaaacacagatagatctttgtaaagacttgagatatgaacttaag
aaaggtatgacacatgtttag
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